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  3. RAFL05-21-L05

RAFL05-21-L05

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda07481)

full reading [+] show sequence

Nucleotide sequence: RAFL05-21-L05 - full reading 
ATTCCTCTTC GCCTTCCTAA GGAAAAAACA CTAGTCGCTC GCTGCTCTTC 
AATTTTCTTC TCGAATCTAA TCGATTGATT TCTCCTTCGA TTCTTCAGGA 
GAATCACTGA AGCTTTTGCC TCCCAAGTAG AAAGAGATAT GGCAACTCTT 
GAAGATTCTT TCCTTGCTGA TTTGGACGAG TTATCTGACA ATGAAGCAGA 
ATTGGACGAG AATGATGGTG ATGTTGGAAA GGAAGAAGAA GATGTTGATA 
TGGATATGGC TGATTTAGAG ACACTTAACT ATGATGATCT CGATAATGTT 
TCTAAGCTGC AGAAGAGTCA GAGATATGCT GATATTATGC ATAAAGTAGA 
GGAGGCTCTT GGGAAAGATT CTGATGGAGC TGAGAAAGGA ACTGTCTTGG 
AAGATGATCC TGAGTATAAG CTTATTGTGG ATTGTAATCA GCTTTCGGTC 
GATATTGAGA ATGAAATCGT TATTGTCCAC AACTTTATCA AAGACAAGTA 
CAAGCTTAAG TTTCAAGAGC TTGAGTCGTT GGTTCATCAC CCTATTGACT 
ATGCATGTGT TGTGAAGAAG ATTGGGAATG AGACGGATTT GGCTCTTGTT 
GATCTCGCTG ACCTTCTTCC TTCAGCTATT ATCATGGTTG TTTCAGTTAC 
TGCTTTAACT ACGAAAGGGA GTGCACTGCC AGAGGATGTT TTGCAAAAGG 
TGTTAGAGGC TTGTGATCGG GCTTTAGATC TTGATTCCGC AAGGAAGAAG 
GTCCTTGAGT TTGTTGAAAG TAAGATGGGA TCTATTGCAC CTAATCTTTC 
TGCTATTGTT GGGAGTGCTG TTGCAGCCAA ACTCATGGGG ACTGCTGGAG 
GTTTGTCAGC ACTTGCTAAA ATGCCTGCGT GTAATGTTCA AGTTCTTGGC 
CACAAGAGGA AGAACCTTGC TGGGTTTTCT TCTGCAACGT CTCAGTCCCG 
TGTGGGTTAT CTGGAGCAGA CAGAGATTTA CCAAAGCACG CCTCCTGGAC 
TTCAGGCTCG CGCTGGCAGG CTCGTGGCTG CAAAATCAAC TTTGGCAGCA 
AGAGTTGATG CTACTAGAGG GGATCCGTTA GGGATAAGTG GAAAAGCTTT 
CAGGGAGGAG ATCCGTAAGA AGATTGAGAA ATGGCAAGAA CCTCCTCCGG 
CAAGACAGCC TAAGCCACTT CCTGTTCCTG ATTCTGAACC GAAGAAAAGA 
AGGGGTGGTC GCCGTCTAAG AAAAATGAAA GAAAGGTATC AAGTAACAGA 
TATGAGGAAG CTGGCCAACA GAATGGCGTT TGGTACACCT GAAGAGAGCT 
CCCTCGGTGA TGGACTAGGA GAAGGTTATG GAATGCTTGG CCAGGCAGGA 
AGCAACAGGC TGCGAGTATC CAGTGTTCCG AGCAAGCTTA AGATTAATGC 
TAAGGTCGCC AAAAAGCTTA AAGAAAGGCA GTATGCGGGT GGTGCGACTA 
CCTCTGGTTT GACATCGAGC CTGGCTTTCA CTCCTGTGCA GGGAATAGAG 
TTGTGCAATC CTCAGCAGGC TTTAGGATTA GGAAGTGGGA CTCAAAGCAC 
TTACTTCTCA GAGTCAGGAA CCTTCTCGAA GCTGAAGAAG ATCTAAAATA 
TGGAAGACAG AGATACAAGT CTTGAAAAGC CGAGCACTAA AAGTGTAAAA 
ATGAAACAAA GGTGGAAAGA AACTGCTTTC TCTATCTCAT GTCTGTTTTA 
AGGTTTCTTC GGTCACTTAA GAGACAAAAG GCATTGTTTT GATCACTCTT 
TGGAAACGTT TTATAAATTT TATTTTTGTA TTAGAGTCAA AAAAAAAAAA 
AAAA

Gene models with high sequence identity

  1. AT1G60170.1 [+] show detail - pre-mRNA processing ribonucleoprotein binding region-containing protein
    E-value: 0; Score: 99.94

 

InterPro Scan Digest

Program Description E-value
HMMPanther PRE-MRNA SPLICING FACTOR PRP31 4.7e-241
superfamily Nop domain 1.6e-66
HMMPfam Pre-mRNA processing ribonucleoprotein, snoRNA-binding domain 1.4e-49
HMMPfam Prp31 C-terminal 4.9e-41
HMMPfam NOSIC 1.5e-19

See the detailed result >

AT1G60170.1

Model type
Protein coding
Short Description
pre-mRNA processing ribonucleoprotein binding region-containing protein
Computational Description
embryo defective 1220 (emb1220); CONTAINS InterPro DOMAIN/s: Pre-mRNA processing ribonucleoprotein, snoRNA-binding domain (InterPro:IPR002687), NOSIC (InterPro:IPR012976), Prp31 C-terminal (InterPro:IPR019175); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G70400.1); Has 1596 Blast hits to 1590 proteins in 356 species: Archae - 207; Bacteria - 2; Metazoa - 385; Fungi - 430; Plants - 224; Viruses - 0; Other Eukaryotes - 348 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-21-L05 introduced

  • F06425 - seed::increased size / seed::increased length
  • F21514 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

2 mutant lines found