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  3. RAFL05-21-M07

RAFL05-21-M07

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda17147)

full reading [+] show sequence

Nucleotide sequence: RAFL05-21-M07 - full reading 
GAATTGCAAA TCAAATGGAT CGTCTTAAGC TTTATTTCTC CGTTTTCGTT 
TTGTCTTTCT TTATCGTCTC GGTTTCGTCG TCTGATGTCA ACGACGGCGA 
TGATCTCGTG ATCCGTCAGG TGGTTGGTGG AGCCGAGCCT CAGGTTTTGA 
CCTCAGAGGA TCACTTTTCT CTCTTCAAGC GGAAGTTCGG GAAGGTCTAC 
GCTTCCAACG AGGAGCATGA CTATAGATTC TCGGTTTTCA AAGCGAATCT 
CAGGCGAGCG AGGCGTCACC AGAAGTTGGA TCCGTCGGCG ACTCATGGTG 
TTACGCAGTT CTCAGATCTG ACTCGGTCTG AGTTCCGTAA GAAGCACTTG 
GGGGTTAGAA GTGGCTTTAA GCTTCCTAAA GATGCCAACA AGGCTCCGAT 
TCTCCCTACC GAAAATCTCC CTGAGGATTT TGATTGGAGA GATCATGGCG 
CCGTTACTCC CGTCAAAAAT CAGGGATCTT GCGGCTCTTG CTGGAGTTTC 
AGCGCCACTG GAGCTTTGGA AGGTGCTAAC TTCCTCGCTA CCGGCAAACT 
CGTCAGCCTC AGCGAACAAC AGCTCGTCGA CTGTGATCAC GAGTGTGATC 
CCGAGGAGGC AGATTCCTGC GACTCTGGTT GCAATGGTGG GCTAATGAAC 
AGCGCTTTTG AATACACCCT CAAAACCGGA GGGCTCATGA AAGAAGAAGA 
CTATCCTTAC ACCGGAAAGG ACGGCAAGAC CTGCAAGCTA GACAAGTCCA 
AGATCGTTGC CTCTGTCTCC AACTTCAGTG TTATCTCCAT TGATGAAGAA 
CAGATTGCTG CAAACCTTGT CAAGAACGGA CCTCTTGCTG TAGCCATCAA 
CGCTGGCTAT ATGCAGACTT ACATTGGAGG AGTCTCATGC CCTTACATAT 
GCACCAGGAG GCTCAACCAC GGTGTCTTAT TGGTTGGCTA TGGAGCGGCA 
GGTTACGCTC CGGCTAGGTT CAAGGAGAAG CCTTACTGGA TCATCAAGAA 
CTCGTGGGGA GAGACTTGGG GTGAAAATGG TTTCTACAAA ATCTGCAAAG 
GCCGTAACAT TTGTGGTGTT GACAGTATGG TCTCCACTGT TGCAGCCACC 
GTCTCAACCA CCGCCCATTA AGCATCTCGT CAATAAGTTT TAATTACTTT 
GGTGATTTGT ATGAGCGAGC TCTCTTTGCG CTGCTGACTC TCTCTATTTA 
TCTCTGCTTC TTGCTTGTAA ATAAAATGCG TTCTATTGAC CAAAAAAAAA 
A

Gene models with high sequence identity

  1. AT4G39090.1 [+] show detail - Papain family cysteine protease
    E-value: 0; Score: 99.92

 

InterPro Scan Digest

Program Description E-value
Gene3D no description 3.6e-98
HMMSmart Proteinase inhibitor I29, cathepsin propeptide 7.1e-23
HMMSmart Peptidase C1A, papain C-terminal 1.8e-111
superfamily Cysteine proteinases 1.8e-104
PatternScan Peptidase, cysteine peptidase active site 0
PatternScan Peptidase, cysteine peptidase active site 0
PatternScan Peptidase, cysteine peptidase active site 0
HMMPfam Peptidase C1A, papain C-terminal 2.8e-75
HMMPfam Proteinase inhibitor I29, cathepsin propeptide 0.0000000000019
HMMPanther CYSTEINE PROTEASE 6.4e-238
HMMPanther Peptidase C1A, papain 6.4e-238
FPrintScan Peptidase C1A, papain C-terminal 0.00000000016
FPrintScan Peptidase C1A, papain C-terminal 0.00000000016
FPrintScan Peptidase C1A, papain C-terminal 0.00000000016

See the detailed result >

AT4G39090.1

Model type
Protein coding
Short Description
Papain family cysteine protease
Curator Summary
Similar to cysteine proteinases, induced by desiccation but not abscisic acid. Required for RRS1-R mediated resistance against Ralstonia solanacearum. Interacts with the R. solanacearum type III effector PopP2. RD19 associates with PopP2 to form a nuclear complex that is required for activation of the RRS1-R
Computational Description
RESPONSIVE TO DEHYDRATION 19 (RD19); CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Proteinase inhibitor I29, cathepsin propeptide (InterPro:IPR013201), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169); BEST Arabidopsis thaliana protein match is: Papain family cysteine protease (TAIR:AT2G21430.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-21-M07 introduced

  • F01023 - Specific phenotypes were NOT observed.
  • F03628 - Specific phenotypes were NOT observed.
  • F04129 - Specific phenotypes were NOT observed.
  • F06606 - seed::increased size / seed::increased length
  • F06903 - Specific phenotypes were NOT observed.
  • F06934 - Specific phenotypes were NOT observed.
  • F09904 - Specific phenotypes were NOT observed.
  • F23034 - seed::increased size / seed::increased length
  • F24427 - Specific phenotypes were NOT observed.
  • F27520 - Specific phenotypes were NOT observed.
  • F28519 - Specific phenotypes were NOT observed.
  • F30115 - Specific phenotypes were NOT observed.
  • F30220 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

25 mutant lines found