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RAFL05-21-M20

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda01400)

full reading [+] show sequence

Nucleotide sequence: RAFL05-21-M20 - full reading 
ATTGGCCATC GAACACACCA CACAGAGAAA ACAATATGAG CAATCATCAA 
ACTCAGGTGT TGAAGCTATT GGAGCCATGG TGTGAACTTA AAGACAAAGT 
GGTTCTTGTG ACAGGAGCTT CCTCTGGTAT TGGAAGAGAG ATCTGTCTTG 
ATCTTGCCAA AGCTGGTTGC CAGGTTATTG CAGCAGCTCG TCGTGTTGAT 
CGACTCAACT CTCTCTGCTC TGAAATCAAC AGCTTCAGTT CAACTGGAAT 
CCAAGCCGCA GCTCTTGAGT TAGACGTTTC ATCAGACGCA GCCACCATTC 
AAAAAGCGGT CAGGGAAGCT TGGGACATCT TTGGAAAGAT CGATGCATTG 
ATCAACAATG CTGGAATCAG AGGCAATGTC AAGTCGAGTT TGGATTTGTC 
AGAGGACGAA TGGGACAACG TCTTCAAGAC CAACTTAAAG GGTCCTTGGT 
TAGTATCCAA ACATGTTTGT ATGTTAATGC GTGACGCTAA ACGAGGTGGC 
TCGGTGATAA ACATCTCATC GATCGCCGGG ATCCGGGGTA TGTTGCCCGG 
TGGACTTGCT TATGCTTGTT CCAAAGGCGG TGTTGACACC ATGTCAAGGA 
TGATGGCACT TGAGTTAGGT GTTCATAAGA TCAGAGTGAA CTCGATCGCA 
CCGGGGCTTT TCAAGTCAGA GATCACACAA GGTCTTATGC AAAAGGAGTG 
GCTCAAGAAT GTTACCGAGA GGACTGTGCC GTTAAAGGTG CAACAGACCG 
TTGATCCAGG GCTTACTTCT CTGGTTCGCT ATCTCATTCA TGACTCTTCT 
CAATATATAT CCGGGAATAC ATACATTGTT GATTCCGGTG CTACATTGCC 
CGGTGTGCCT ATCTTTTCAT CTCTCTGAAA ATCGAACCTT ATAATATCTT 
ATCTTGTGCA ATAATAAGTG AATACATTTA CCCAAAAAAA AAAAAAAAA

Gene models with high sequence identity

  1. AT3G55290.1 [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
Gene3D NAD(P)-binding domain 5.7e-63
HMMPfam Short-chain dehydrogenase/reductase SDR 3.9e-30
superfamily NAD(P)-binding domain 2.7e-70
HMMPanther BETA-KETOACYL-ACP REDUCTASE-RELATED 4.8e-187
HMMPanther Short-chain dehydrogenase/reductase SDR 4.8e-187
PatternScan Short-chain dehydrogenase/reductase, conserved site 0
FPrintScan Glucose/ribitol dehydrogenase 2.3e-31
FPrintScan Glucose/ribitol dehydrogenase 2.3e-31
FPrintScan Glucose/ribitol dehydrogenase 2.3e-31
FPrintScan Glucose/ribitol dehydrogenase 2.3e-31
FPrintScan Glucose/ribitol dehydrogenase 2.3e-31
FPrintScan Short-chain dehydrogenase/reductase SDR 0.000000000014
FPrintScan Short-chain dehydrogenase/reductase SDR 0.000000000014
FPrintScan Short-chain dehydrogenase/reductase SDR 0.000000000014

See the detailed result >

AT3G55290.1

Model type
Protein coding
Short Description
NAD(P)-binding Rossmann-fold superfamily protein
Computational Description
NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: peroxisome; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: Short-chain dehydrogenase/reductase, conserved site (InterPro:IPR020904), NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT3G55310.1); Has 128769 Blast hits to 128555 proteins in 3647 species: Archae - 1021; Bacteria - 82974; Metazoa - 6760; Fungi - 6996; Plants - 3211; Viruses - 5; Other Eukaryotes - 27802 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-21-M20 introduced

  • F01102 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

6 mutant lines found