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  3. RAFL05-21-N06

RAFL05-21-N06

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda01407)

full reading [+] show sequence

Nucleotide sequence: RAFL05-21-N06 - full reading 
AGAGATCATC GTCGTCGTCG TTCAGAAACC TTCAAAAATG GCTGGAAAAC 
TCATGCACGC TCTTCAGTAC AACTCTTACG GTGGTGGCGC CGCCGGATTA 
GAGCATGTTC AAGTTCCGGT TCCAACACCA AAGAGTAATG AGGTTTGCCT 
GAAATTAGAA GCTACTAGTC TAAACCCTGT TGATTGGAAA ATTCAGAAAG 
GAATGATCCG CCCATTTCTG CCCCGCAAGT TCCCCTGCAT TCCAGCTACT 
GATGTTGCTG GAGAGGTCGT TGAGGTTGGA TCAGGAGTAA AAAATTTTAA 
GGCTGGTGAC AAAGTTGTAG CGGTTCTTAG CCATCTAGGT GGAGGTGGAC 
TTGCTGAGTT CGCTGTTGCA ACCGAGAAGC TGACTGTCAA AAGACCTCAA 
GAAGTGGGAG CAGCTGAAGC AGCAGCTTTA CCTGTGGCGG GTCTAACCGC 
TCTCCAAGCT CTTACTAATC CTGCGGGGTT GAAGCTGGAT GGTACAGGCA 
AGAAGGCGAA CATCCTGGTC ACAGCAGCAT CTGGTGGGGT TGGTCACTAT 
GCAGTCCAGC TGGCAAAACT TGCAAATGCT CACGTAACCG CTACATGTGG 
TGCCCGGAAC ATAGAGTTTG TCAAATCGTT GGGAGCGGAT GAGGTTCTCG 
ACTACAAGAC TCCCGAGGGA GCCGCCCTCA AGAGTCCGTC GGGTAAAAAA 
TATGACGCTG TGGTCCATTG TGCAAACGGG ATTCCATTTT CGGTATTCGA 
ACCAAATTTG TCGGAAAACG GGAAGGTGAT AGACATCACA CCGGGGCCTA 
ATGCAATGTG GACTTATGCG GTTAAGAAAA TAACCATGTC AAAGAAGCAG 
TTAGTGCCAC TCTTGTTGAT CCCAAAAGCT GAGAATTTGG AGTTTATGGT 
GAATCTAGTG AAAGAAGGGA AAGTGAAGAC AGTGATTGAC TCAAAGCATC 
CTTTGAGCAA AGCGGAGGAT GCTTGGGCCA AAAGTATCGA TGGTCATGCT 
ACTGGGAAGA TCATTGTCGA GCCATAAGAG CGTTGTAGCC ATCTTTGACT 
GTCTGTGAAT GTGATAATAG ATGTTAAAAG TTTGCGTACC GTTTACAGAA 
TGTTTTATGT TGTTTTGTTT AATATACCCG AGTATGTCGA AAGTTACATG 
AAAAGAAAAT TTGGATGAAA TAAATAATAC TTGTTAAAAA AAAAAAAAAA 
A

Gene models with high sequence identity

  1. AT4G13010.1 [+] show detail - Oxidoreductase, zinc-binding dehydrogenase family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily GroES-like 3.7e-38
superfamily NAD(P)-binding domain 3.4e-30
HMMPfam Alcohol dehydrogenase, zinc-binding 1.1e-11
HMMPfam Alcohol dehydrogenase GroES-like 8.6e-10
Gene3D no description 7.2e-36
HMMPanther ALCOHOL DEHYDROGENASE, ZINC-CONTAINING 4.1e-113
HMMPanther Alcohol dehydrogenase superfamily, zinc-containing 4.1e-113
HMMSmart Polyketide synthase, enoylreductase 1.9e-11

See the detailed result >

AT4G13010.1

Model type
Protein coding
Short Description
Oxidoreductase, zinc-binding dehydrogenase family protein
Computational Description
Oxidoreductase, zinc-binding dehydrogenase family protein; FUNCTIONS IN: oxidoreductase activity, zinc ion binding; INVOLVED IN: oxidation reduction; LOCATED IN: chloroplast thylakoid membrane, chloroplast, plasma membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Alcohol dehydrogenase, C-terminal (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: Oxidoreductase, zinc-binding dehydrogenase family protein (TAIR:AT1G23740.1); Has 34133 Blast hits to 33976 proteins in 2527 species: Archae - 549; Bacteria - 21108; Metazoa - 1143; Fungi - 3531; Plants - 1393; Viruses - 3; Other Eukaryotes - 6406 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-21-N06 introduced

  • F03441 - Specific phenotypes were NOT observed.
  • F28241 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

3 mutant lines found