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RAFL05-21-P18

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda02825)

full reading [+] show sequence

Nucleotide sequence: RAFL05-21-P18 - full reading 
ATTTATCTAT CTATCCAATT GGAGACGAAT CATATCGAGC GATGGATTTG 
GCAGAACTGT GGGCGATTTT CGGACCCGGA TTCTCCGGCG CCGTTTTCGG 
AACCGGGTGG TGGTTTTGGG TCGACGCCGT CGTTTGCAGT TCCATCCAAG 
TTCCCTTCGT CCATTACCTT CCCGGCATAT TCGCTTCTCT CGGAGCTTTG 
ATGTTCAATT GCGTCAGAAA AGAAGACATT GATTACTCTC CTTACGACGA 
AGGCGAGTGG AGATTGAAGC TGTGGCTTTT CATAGCGTAT GTCGTAGCAT 
TTGTTTCCTT AGCTGCTTCT GTTGGCTTGC TGATTCAAGA TTCGGTTGTG 
AAGACTGGGC CTTCAACTTG GACTGGTGTG GCTGGTGTCT TTCAATGTGT 
ATTTGTATTG ATAAGTGGGC TAATGTATTG GACATCGCAC TCAGAGTAGC 
GCACAGGCAC ATACTTCATC TCCGACTCAG ATTCATACTG TGACAACTTA 
CAAGTTCCTC TCGTTTCTCT ACTATGTAAA TTCCTGTGTC TTGTCTTGTC 
ACCTTGGCAT TGTGTGCGAG ATTCCTCTGT TGCATCAGTG TGTGTTTCTG 
TTAAAACTTT GTGTGAATGT TATTGAAAAT ACTCCAAATC AATCAGTTGT 
CCAAAGAGAA CGCAAAAAAA AAAAAAAATA AAAAAAAAAA AAAAA

Gene models with high sequence identity

  1. AT1G36980.1 [+] show detail - unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0220 (InterPro:IPR...
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther Uncharacterised protein family UPF0220 1.3e-66
HMMPfam Uncharacterised protein family UPF0220 4.7e-39

See the detailed result >

AT1G36980.1

Model type
Protein coding
Computational Description
unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0220 (InterPro:IPR007919); Has 424 Blast hits to 424 proteins in 159 species: Archae - 0; Bacteria - 0; Metazoa - 228; Fungi - 120; Plants - 62; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-21-P18 introduced

  • F20107 - Specific phenotypes were NOT observed.
  • F21405 - rosette leaf::increased size / whole plant::increased height
  • F22322 - Specific phenotypes were NOT observed.
  • F22825 - Specific phenotypes were NOT observed.
  • F23112 - Specific phenotypes were NOT observed.
  • F23811 - seed::increased size
  • F25610 - Specific phenotypes were NOT observed.
  • F28512 - Specific phenotypes were NOT observed.
  • F28825 - Specific phenotypes were NOT observed.
  • F29530 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

13 mutant lines found