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RAFL05-21-P21

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda02827)

full reading [+] show sequence

Nucleotide sequence: RAFL05-21-P21 - full reading 
TGAGGAAAAA AAATTCTGGA ACTTTCGAGC TTCTGTTTTG CGGTGCTCTC 
AAAGCTTATA TCGGATCTCG AATCTTGAAT CGGACTCAGA ACCTCGGATC 
TTCGAAAATC GACGAACATG TCTTCTCCTG GCGAATTCTA TAACTCACTT 
CCACCTATAA CCAAGGCTTA TGGTACGTTG TGCTTTTTCA CTACAGTAGC 
CACGCAGCTT GGCTTAGTTG CTCCCGTTCA CATTGCTTTA ATTCCTGAAC 
TTGTACTTAA GCAGTTCCAG ATCTGGAGGC TGATAACAAA CTTGTTTTTC 
CTCGGTGGTT TCTCTATCAA TTTTGGAATA CGTCTTTTGA TGATAGCAAG 
ATATGGAGTT CAACTCGAGA AAGGGCCATT TGAAAGGCGG ACAGCAGACT 
TTTTGTGGAT GATGATCTTT GGATCCTTCA CTCTATTGGT ATTATCAGTC 
ATACCATTTT TCTGGACACC GTTTCTTGGT GTTTCACTTG TGTTCATGCT 
TCTTTATCTC TGGAGCCGAG AATTTCCAAA TGCCAACATC AGCCTATACG 
GTCTTGTCAC TCTTAAGGCT TTCTACCTCC CATGGGCAAT GCTAGCACTT 
GATGTTATCT TCGGTTCTCC GATCATGCCA GATCTTCTTG GCATCATAGC 
TGGACATCTA TACTACTTCC TAACAGTCCT TCATCCTCTT GCTACCGGAA 
AAAACTACCT GAAAACCCCA AAATGGGTTA ATAAAATCGT AGCAAGATGG 
CGAATTGGAG CTCCAGTTGC AAGTGTTCGA CAAGCAGGTG GTGTAGGAGC 
AGCAGGACCC GGAGCTGGAG GAGGAGTAGG AGGAGGAGGA GCTTATTCAA 
GCGCTCGTGC CCCACCCGAG AGTTCAAACA CAGCATTCAG AGGTCGATCA 
TATCGTCTCA CCGACTGAAA TAGAAATCTT CTCGAGTTTC TTTGTTTTCA 
TCATATCAAA TCTTTTTCAA ACAATGCCAC TAACTAATCC CAGGTAGCTT 
TGTGTTTTCG AACAGTACAG TTTTTGAATA TATGACTCTG TAGGAAGAAT 
CTTTGAGGTT TTAATACAAT GTTCTTTTCA AAAAAAAAAA AAAAA

Gene models with high sequence identity

  1. AT4G29330.1 [+] show detail - DERLIN-1
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam Der1-like 3.2e-46
HMMPanther Der1-like 4.3e-87

See the detailed result >

AT4G29330.1

Model type
Protein coding
Short Description
DERLIN-1
Computational Description
DERLIN-1 (DER1); CONTAINS InterPro DOMAIN/s: Der1-like (InterPro:IPR007599); BEST Arabidopsis thaliana protein match is: DERLIN-2.2 (TAIR:AT4G04860.1); Has 918 Blast hits to 916 proteins in 241 species: Archae - 0; Bacteria - 22; Metazoa - 340; Fungi - 200; Plants - 147; Viruses - 0; Other Eukaryotes - 209 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-21-P21 introduced

  • F02131 - seed::increased length / seed::decreased width
  • F03216 - Specific phenotypes were NOT observed.
  • F17528 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found