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RAFL06-07-A07

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda01391)

full reading [+] show sequence

Nucleotide sequence: RAFL06-07-A07 - full reading 
GCCGCTTCTG TTCGGTGTCC TCTCTCTCTT TCACTACTCA CCACCACTCT 
CTCTCTCTCT CCCTCCATCT CTCTTGGATT CTCTCTCAGA TTCCATGGAA 
GCTCCAAAAA GCTGATTCGT TCAGCCAATT TTTCTTCACT CTCTCTCAGA 
TTCGGATCCG TGGTCAGATC AACCACCGTG TGTTTTCCGA TCCGATTCGA 
TTCTTTTTTT TGTCAGAGCT CTCAGATAAA TACTAGGATT CCGTTTCCAC 
CACAGATCCT TGATTTGATT TGGATTTATT TCTTCTTCTT TCTCTCTTCG 
AGTTTGATTC CACAAGATAC CTTGTCCTGC ATTGGAGAAA CTAATTTAAG 
GTAAGGTTTG ACTACTTAGA TGGTATGCAG CAGTTTCATA AGGAGTTTCA 
TTGTTCAAGC TGGTTGTCGT ATTGGGGTGT TGGCTCAAGG AAGACATCAG 
TTTATTCATA TTAAGAAGAC TTTGAGTGTG GGTTTTGGAT TTAGAACTAG 
TGTGATTGGA TTTAGAACAA CCAGTGGAAT TGGATTTAGA ACTAGTGCGA 
AGATGATGGT TGATACTTCT GCTGGAGAGA AACGTATATC CTTAGTTGAT 
ATGCCGCCTG AGAAAGTTGA TGATGGTGGA TACATCGGTG GTGGGTGGAA 
AAATGATGAT GGAAGCTTGA GCTGTGGGTA CTGTAGTTTC AGAGGGAAAA 
GATCTACGAT GGAAGATTTC TATGATATCA AAGCTTCCAC TATTGAAGGC 
CAAGCAGTTT GCATGTTTGG AATATTTGAT GGCCATGGTG GTTCACGTGC 
TGCTGAATAC CTGAAGGAAC ACCTGTTTAA CAATCTCATG AAGCATCCAC 
AATTTTTGAC AGACACCAAG CTGGCATTAA ATGAAACATA TAAACAAACT 
GATGTAGCAT TCCTCGAGTC CGAAAAGGAT ACTTACAGAG ATGATGGCTC 
CACAGCATCT GCTGCTGTGT TGGTGGGGAA CCATTTGTAT GTTGCAAATG 
TTGGAGACTC GAGGACAATA GTTTCTAAAG CTGGGAAAGC GATCGCGCTA 
TCTGATGACC ATAAGCCAAA TAGAAGCGAT GAAAGAAAGC GAATTGAAAG 
TGCTGGTGGT GTTATCATGT GGGCAGGAAC ATGGAGAGTA GGTGGGGTGT 
TGGCTATGTC CCGGGCCTTT GGTAACAGAA TGCTGAAGCA ATTCGTTGTT 
GCTGAACCCG AGATACAAGA TCTAGAGATA GATCATGAGG CCGAGTTGCT 
TGTGCTTGCA AGTGACGGTT TATGGGATGT GGTACCAAAT GAGGATGCGG 
TAGCCCTTGC TCAGAGCGAG GAAGAGCCCG AAGCAGCTGC CCGCAAGTTA 
ACTGACACTG CCTTCAGCCG TGGCAGTGCA GACAACATCA CGTGCATTGT 
TGTTAAATTC CGTCATGATA AGACAGAATC TCCTAAAATC GAAACAAACG 
CCATGGCTGA ATCGGAACCT GAACTGAACC CCACAACTGA ACTGGAACCT 
GAATCAAACC CCAGTACTGC ATTGGAAACT GAATCAATCC CCAAAGCTGA 
ACTGGAATCC GAACCTGATG CTATACCTGA TCCAAAACCT GAAACCGAAC 
CAGAGACCAA GGGTGAGAAA GCTGGTGAGT AAGGTAGCAG CCGGGGAAAG 
GTGTCCATAC TGTTGGGGAC ATGTGGAAAC AGATGAATAT AAAATTGCTT 
AGTAAGTTGT GTGGTTTGTG GCTACCTGTA ACGTGTGAGG ATTTGTGTTT 
TTTGGTTTTG TGTTGCATTC ATGCACATGC CTATGCCTGC CTTGAGGACG 
ACGACGACCC TTTTGACATG TCCCCGATTT TTGTCTATTC ATTTTACCCT 
ATTTTGTTTT TGTTGGTGCT ACTCACACCA AAAACAGCAC ATTTGTTCTC 
TGTTTCTCCT ACTTTTTTCT ATCTTTTATT TAAAACACCG TCCATTCCAA 
TAAAAAAAAA AAAAAA

Gene models with high sequence identity

  1. AT5G53140.1 [+] show detail - Protein phosphatase 2C family protein
    E-value: 0; Score: 99.95

 

InterPro Scan Digest

Program Description E-value
HMMPfam Protein phosphatase 2C, N-terminal 1.2e-63
HMMSmart Protein phosphatase 2C-related 0.00570000021701947
HMMPanther PTHR13832:SF87 0
Gene3D Protein phosphatase 2C-related 2.70001369379003e-75
PatternScan Protein phosphatase 2C, manganese/magnesium aspartate binding site 0
superfamily Protein phosphatase 2C-related 1.5e-77
HMMPanther Protein phosphatase 2C 0
HMMSmart Protein phosphatase 2C-related 2.0000139277205e-85

See the detailed result >

AT5G53140.1

Model type
Protein coding
Short Description
Protein phosphatase 2C family protein
Computational Description
Protein phosphatase 2C family protein; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: protein serine/threonine phosphatase complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT5G10740.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-07-A07 introduced

  • F07615 - Specific phenotypes were NOT observed.
  • F12126 - rosette leaf::abnormal / cauline leaf::epinastic / whole plant::increased height / stem::abnormal / rosette leaf::epinastic / rosette leaf::abnormal / cauline leaf::decreased size / stem::decreased thickness / stem::desaturated green / cauline leaf::decreased width / whole plant::decreased height / stem internode::decreased length
  • F24931 - Specific phenotypes were NOT observed.
  • F25021 - seed::increased length
  • F30222 - Specific phenotypes were NOT observed.
  • F30433 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

8 mutant lines found