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RAFL06-07-B07

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda09362)

full reading [+] show sequence

Nucleotide sequence: RAFL06-07-B07 - full reading 
ATCTGCGTCA TTCCTAAGCT CACTATACTC TCTGTTTAAA AAAACCTATC 
TCTCTCTCTC TCTCTCGCCG CCTTCCTCTC ACCCTCTTCG CATAGCTTCA 
CTTTCGCCGA TGGCTCTACC TAACCAGCAA ACCGTGGATT ACCCTAGCTT 
CAAGCTCGTT ATCGTTGGCG ATGGAGGCAC AGGGAAGACC ACATTTGTAA 
AGAGACATCT TACTGGAGAG TTTGAGAAGA AGTATGAACC CACTATTGGT 
GTTGAGGTTC ATCCTCTTGA TTTCTTCACT AACTGTGGCA AGATCCGTTT 
CTACTGTTGG GATACTGCTG GCCAAGAGAA ATTTGGTGGT CTTAGGGAAG 
GTTACTACAT CCATGGACAA TGTGCTATCA TCATGTTTGA TGTCACAGCA 
CGACTGACAT ACAAGAATGT TCCAACATGG CACCGTGATC TTTGCAGGGT 
TTGTGAAAAC ATCCCAATTG TTCTTTGTGG GAATAAAGTT GATGTGAAGA 
ACAGGCAAGT CAAGGCCAAG CAGGTAACAT TCCACAGGAA GAAGAACCTC 
CAGTATTACG AGATATCTGC CAAGAGCAAC TACAACTTCG AGAAGCCATT 
CTTGTACCTT GCTAGAAAGC TCGCCGGGGA CGCTAATCTT CACTTTGTGG 
AATCACCTGC CCTTGCTCCC CCGGAAGTTC AAATCGACTT GGCTGCTCAG 
CAGCAGCATG AGGCGGAGCT TGCAGCAGCA GCAAGTCAGC CACTTCCTGA 
TGACGATGAT GACACCTTCG AGTAGAGAAA GAGAGATGTG ATCTGTCACT 
GATTACCCGT TAGGGCTTGT CTGAACTTTT TTTTGTTCAT GGTGCTATTT 
TTATGTGTCC GTACTTTGAA ATGAATCGAT GACATTAGTA AAAAAAAAAA 
AAAAAAAAAA AAAAAA

Gene models with high sequence identity

  1. AT5G55190.1 [+] show detail - RAN GTPase 3
    E-value: 0; Score: 99.89

 

InterPro Scan Digest

Program Description E-value
superfamily P-loop containing nucleoside triphosphate hyd 1.1e-51
HMMTigr Small GTP-binding protein 1.8e-21
HMMSmart Ras small GTPase, Ras type 8e-18
HMMSmart Ras small GTPase, Rab type 7.3e-28
HMMSmart Small GTPase, Rho type 1.3e-08
HMMSmart Ran GTPase 1.3e-166
HMMPfam Ras 6e-50
Gene3D no description 8.4e-49
HMMPanther GTP-BINDING NUCLEAR PROTEIN RAN 1.1e-60
HMMPanther RAS-RELATED GTPASE 1.1e-60
ProfileScan Ran GTPase 29.886
FPrintScan Ran GTPase 4.5e-60
FPrintScan Ran GTPase 4.5e-60
FPrintScan Ran GTPase 4.5e-60
FPrintScan Ran GTPase 4.5e-60
FPrintScan Ran GTPase 4.5e-60

See the detailed result >

AT5G55190.1

Model type
Protein coding
Short Description
RAN GTPase 3
Curator Summary
A member of RAN GTPase gene family. Encodes a small soluble GTP-binding protein. Likely to be involved in nuclear translocation of proteins. May also be involved in cell cycle progression.
Computational Description
RAN GTPase 3 (RAN3); FUNCTIONS IN: protein binding, GTP binding, GTPase activity; INVOLVED IN: protein import into nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ran GTPase (InterPro:IPR002041), Small GTP-binding protein (InterPro:IPR005225), Ras (InterPro:IPR013753); BEST Arabidopsis thaliana protein match is: RAS-related nuclear protein-1 (TAIR:AT5G20010.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-07-B07 introduced

  • F05614 - Specific phenotypes were NOT observed.
  • F11736 - Specific phenotypes were NOT observed.
  • F18844 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found