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RAFL06-07-C12

RIKEN Arabidopsis Full-length cDNAs

Resource: (pdz87549)

5 prime EST [+] show sequence

Nucleotide sequence: RAFL06-07-C12 - 5 prime EST 
GGAAGTAGCA GTCCTCTCTT CAATTTCAAC CGGCACTTTC TTCTCTTCTT 
CTTCTTCTTC CCAATCTTCC TCGTCTCTTT ACCTACACCT ATATATATAT 
ATATATATAT ATCTCCTTCC CTCACACACA TACCTGCACA GCTACAATAA 
TCTACTTCCC CTCTTTCAAT AACGGAATTA ATAGTAATCT AATCGGAAGA 
TTCAAGCGAG AAATCGATTT GGTTGTCTGT TAATTTGTTG GGAAATAAAT 
TGAAATAGGA GATTGATTGG ATGGTGAGAA GGCAAGAGGA GGAGAAGAAG 
GCGGAGAAGG GAATGCGTCT GGGGAAATAC GAGCTAGGGA GGACGCTCGG 
CGAGGGTAAT TTCGGTAAAG TTAAATTCGC TAAAGATACC GTCTCCGGTC 
ATTCCTTCGC CGTTAAAATC ATCGACAAGT CTCGTATCGC CGATCTCAAC 
TTCTCCTTAC AGATAAAAAG AGAGATCCGG ACTCTGAAAA TGTTGAAACA 
TCCCCACATT GTTAGATTAC ATGAGGTCTT GGCTAGCAAA ACGAAAATTA 
ATATGGTNNT GGAACTTGTT ACCCGGAGGA GAATTGTTCG ACAGAATTGT 
TTCCAACGGA AAATTAACAG GAACCTGGTG GGAAGAAAAT GTTTNAGCAG 
CTTATCGATG GAATCAGCTA CTG

Gene models with high sequence identity

  1. AT3G17510.1 [+] show detail - CBL-interacting protein kinase 1
    E-value: 0; Score: 98.36

3 prime EST [+] show sequence

Nucleotide sequence: RAFL06-07-C12 - 3 prime EST 
CAATCGAGCT CCTTTTATAT ATACTTAAGA TAATAAATTA TATGAACATG 
GATGGTGTGT TCCATATGAT AAATTATTAG AGCTATGTAT ATCTCTTCAG 
CCGAAAACAC CAACACCTAA GTTACTATCT CTTGCTCCGG CGAGGATGTG 
CCCACGTCTT TTAATAGTCT CTCGTACAAC TGTCTATATA AACATGAATC 
GCCATAAGAT TTTCTTAGCT CAACCACGTT CAGTGACGGC TTTATCTCGA 
AAACCTCAGC TGTTACTGAT AAACCAACTT GACCTTTCTG GTTTCTTTCT 
TCTTGTTTTA CTCTTAACTT GGCATGTTTC TTTTGTACAC TGAATCCCAT 
TTCTGTAACG GCTGTTTCGA TTTTCTCCAG TAAATCTTTT GCTGAGCTAT 
TTGAAGTGAA TCTTATTCTC CTCTCTGATA CATTCTCTTG TTCAAAGAAA 
CCGGACAGGT CAAGAAAGGA AGACATTCCG ATTAACTGAA ACGCATTGAT 
GATGGTCGGT GAATCACTGC CCTTCCCTTC TTCTGATCCG AGTTCTTGGA 
TTGAGAAAGC ATCATCGTCT GTGTCAACTT CTTCTTCGTC ATCATCATCG 
GGAATTGAAG GAATGTACTC AAGTTTGAAC CACTCGCTGG CTTTAATACC 
CACAACTGTG ATCCTCGTGA CTGGATTTGG ATCAAGCATT CTCTTAAT

Gene models with high sequence identity

  1. AT3G17510.1 [+] show detail - CBL-interacting protein kinase 1
    E-value: 0; Score: 100.00

AT3G17510.1

Model type
Protein coding
Short Description
CBL-interacting protein kinase 1
Curator Summary
Encodes a CBL-interacting protein kinase. Specifically interacts with ECT1 and ECT2.
Computational Description
CBL-interacting protein kinase 1 (CIPK1); CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), NAF/FISL domain (InterPro:IPR018451), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), NAF domain (InterPro:IPR004041), CBL-interacting protein kinase (InterPro:IPR020660), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: CBL-interacting protein kinase 17 (TAIR:AT1G48260.1); Has 128786 Blast hits to 126868 proteins in 3954 species: Archae - 151; Bacteria - 15250; Metazoa - 47593; Fungi - 12814; Plants - 31341; Viruses - 523; Other Eukaryotes - 21114 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-07-C12 introduced

  • F06936 - Specific phenotypes were NOT observed.
  • F08505 - Specific phenotypes were NOT observed.
  • F16223 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

9 mutant lines found