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RAFL06-07-C12

RIKEN Arabidopsis Full-length cDNAs

Resource: (pdz87549)

5 prime EST [+] show sequence

Nucleotide sequence: RAFL06-07-C12 - 5 prime EST
GGAAGTAGCA GTCCTCTCTT CAATTTCAAC CGGCACTTTC TTCTCTTCTT 
CTTCTTCTTC CCAATCTTCC TCGTCTCTTT ACCTACACCT ATATATATAT
ATATATATAT ATCTCCTTCC CTCACACACA TACCTGCACA GCTACAATAA
TCTACTTCCC CTCTTTCAAT AACGGAATTA ATAGTAATCT AATCGGAAGA
TTCAAGCGAG AAATCGATTT GGTTGTCTGT TAATTTGTTG GGAAATAAAT
TGAAATAGGA GATTGATTGG ATGGTGAGAA GGCAAGAGGA GGAGAAGAAG
GCGGAGAAGG GAATGCGTCT GGGGAAATAC GAGCTAGGGA GGACGCTCGG
CGAGGGTAAT TTCGGTAAAG TTAAATTCGC TAAAGATACC GTCTCCGGTC
ATTCCTTCGC CGTTAAAATC ATCGACAAGT CTCGTATCGC CGATCTCAAC
TTCTCCTTAC AGATAAAAAG AGAGATCCGG ACTCTGAAAA TGTTGAAACA
TCCCCACATT GTTAGATTAC ATGAGGTCTT GGCTAGCAAA ACGAAAATTA
ATATGGTNNT GGAACTTGTT ACCCGGAGGA GAATTGTTCG ACAGAATTGT
TTCCAACGGA AAATTAACAG GAACCTGGTG GGAAGAAAAT GTTTNAGCAG
CTTATCGATG GAATCAGCTA CTG

Gene models with high sequence identity

  1. AT3G17510.1 [+] show detail - CBL-interacting protein kinase 1
    E-value: 0; Score: 98.36

3 prime EST [+] show sequence

Nucleotide sequence: RAFL06-07-C12 - 3 prime EST
CAATCGAGCT CCTTTTATAT ATACTTAAGA TAATAAATTA TATGAACATG 
GATGGTGTGT TCCATATGAT AAATTATTAG AGCTATGTAT ATCTCTTCAG
CCGAAAACAC CAACACCTAA GTTACTATCT CTTGCTCCGG CGAGGATGTG
CCCACGTCTT TTAATAGTCT CTCGTACAAC TGTCTATATA AACATGAATC
GCCATAAGAT TTTCTTAGCT CAACCACGTT CAGTGACGGC TTTATCTCGA
AAACCTCAGC TGTTACTGAT AAACCAACTT GACCTTTCTG GTTTCTTTCT
TCTTGTTTTA CTCTTAACTT GGCATGTTTC TTTTGTACAC TGAATCCCAT
TTCTGTAACG GCTGTTTCGA TTTTCTCCAG TAAATCTTTT GCTGAGCTAT
TTGAAGTGAA TCTTATTCTC CTCTCTGATA CATTCTCTTG TTCAAAGAAA
CCGGACAGGT CAAGAAAGGA AGACATTCCG ATTAACTGAA ACGCATTGAT
GATGGTCGGT GAATCACTGC CCTTCCCTTC TTCTGATCCG AGTTCTTGGA
TTGAGAAAGC ATCATCGTCT GTGTCAACTT CTTCTTCGTC ATCATCATCG
GGAATTGAAG GAATGTACTC AAGTTTGAAC CACTCGCTGG CTTTAATACC
CACAACTGTG ATCCTCGTGA CTGGATTTGG ATCAAGCATT CTCTTAAT

Gene models with high sequence identity

  1. AT3G17510.1 [+] show detail - CBL-interacting protein kinase 1
    E-value: 0; Score: 100.00

AT3G17510.1

Model type
Protein coding
Short Description
CBL-interacting protein kinase 1
Curator Summary
Encodes a CBL-interacting protein kinase. Specifically interacts with ECT1 and ECT2.
Computational Description
CBL-interacting protein kinase 1 (CIPK1); CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), NAF/FISL domain (InterPro:IPR018451), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), NAF domain (InterPro:IPR004041), CBL-interacting protein kinase (InterPro:IPR020660), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: CBL-interacting protein kinase 17 (TAIR:AT1G48260.1); Has 128786 Blast hits to 126868 proteins in 3954 species: Archae - 151; Bacteria - 15250; Metazoa - 47593; Fungi - 12814; Plants - 31341; Viruses - 523; Other Eukaryotes - 21114 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-07-C12 introduced

  • F06936 - Specific phenotypes were NOT observed.
  • F08505 - Specific phenotypes were NOT observed.
  • F16223 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

9 mutant lines found