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RAFL06-07-H08

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda02836)

full reading [+] show sequence

Nucleotide sequence: RAFL06-07-H08 - full reading 
ACTTCTTCAT CGCCGTCTGC ACAAAACCCT AATCTCACAA TCTCCTACGA 
GATCTATCAG TCTCCACGAA GATGAAGGTT GTTGCCGCAT ACTTGCTCGC 
TGTTTTGAGC GGAAAAGCTT CACCAACCAG TGCCGATATC AAGACTATCC 
TTGGATCAGT TGGTGCTGAG ACAGAGGATT CTCAGATTGA GCTTTTGTTG 
AAGGAAGTGA AAGGAAAAGA TTTGGCTGAG TTGATTGCTG CTGGAAGGGA 
GAAGTTAGCT TCAGTGCCGT CTGGTGGCGG AGGTGGTGTT GCGGTTGCTT 
CTGCTACATC TGGAGGTGGA GGAGGTGGTG GTGCTTCTGC TGCTGAGTCC 
AAGAAAGAAG AGAAGAAGGA AGAAAAGGAA GAATCCGATG ATGACATGGG 
TTTCAGTCTA TTCGAGTAAG CTGGTAGTAG CATGAAAAGT CCGGTTTTGT 
TGTCCTCTTT TAATATTGTA ACCTTTTGAA ATCTATATGT TGTTGTTGTT 
TAGTTTGTAT TCGATCATCT TTTTTAGACA TTGCTGAAAT TCTCAAGAGT 
TTTTGACCCG AATGC

Gene models with high sequence identity

  1. AT2G27710.1 [+] show detail - 60S acidic ribosomal protein family
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther 60S ACIDIC RIBOSOMAL PROTEIN P2 2.9e-63
HMMPanther 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER 2.9e-63
Coil coiled-coil 0
HMMPfam Ribosomal protein 60S 5.7e-26

See the detailed result >

AT2G27710.1

Model type
Protein coding
Short Description
60S acidic ribosomal protein family
Computational Description
60S acidic ribosomal protein family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translational elongation, response to cold; LOCATED IN: in 8 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813); BEST Arabidopsis thaliana protein match is: 60S acidic ribosomal protein family (TAIR:AT2G27720.1); Has 1875 Blast hits to 1874 proteins in 360 species: Archae - 31; Bacteria - 1; Metazoa - 679; Fungi - 442; Plants - 437; Viruses - 0; Other Eukaryotes - 285 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-07-H08 introduced

  • F09544 - Specific phenotypes were NOT observed.
  • F10611 - Specific phenotypes were NOT observed.
  • F21504 - Specific phenotypes were NOT observed.
  • F25349 - seed::increased size / seed::increased length
  • F28034 - Specific phenotypes were NOT observed.
  • F29812 - rosette leaf::present in greater numbers in organism / stem::increased thickness / cauline leaf::increased size / stem::abnormal

Mutant lines with disrupted or induced

7 mutant lines found