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  3. RAFL06-07-H09

RAFL06-07-H09

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda07503)

full reading [+] show sequence

Nucleotide sequence: RAFL06-07-H09 - full reading 
ATCTTCTCCA CCAGAATTTG TTTTAGGCTC TCCTTCTTCT GTTTCTTTTT 
CTCCCAAAGA AACAATTAGA TATGGAGAAC CTTACCCTAG TTTCTTGCTC 
AGCTTCTTCT CCAAAGCTGT TAATTGGATG CAATTTCACT TCCTCGCTGA 
AAAACCCTAC TGGGTTTTCT CGTCGGACTC CTAATATTGT CCTCCGGTGT 
TCCAAAATAT CTGCCTCTGC TCAATCTCAA TCTCCCTCTT CGCGTCCGGA 
GAACACTGGA GAAATCGTGG TTGTGAAACA GAGAAGCAAA GCTTTTGCAA 
GTATATTTTC TTCGAGTCGT GATCAACAGA CAACTTCTGT TGCTTCCCCT 
AGTGTGCCTG TGCCACCACC ATCTTCATCA ACCATAGGAT CACCACTTTT 
CTGGATTGGT GTTGGTGTTG GTCTATCAGC TTTGTTCTCA TATGTAACTT 
CAAATTTAAA GAAATATGCA ATGCAAACAG CTATGAAGAC GATGATGAAC 
CAAATGAATA CGCAAAATAG CCAGTTTAAT AATTCTGGAT TCCCATCAGG 
ATCACCTTTT CCGTTTCCAT TTCCTCCTCA AACAAGTCCT GCTTCCTCGC 
CATTCCAATC TCAATCCCAG TCTTCAGGTG CTACCGTTGA TGTGACAGCG 
ACAAAAGTAG AGACACCTCC TTCAACTAAA CCGAAACCTA CACCTGCAAA 
GGATATAGAG GTGGATAAGC CAAGTGTTGT CTTAGAGGCA AGCAAAGAGA 
AGAAAGAAGA AAAGAACTAT GCCTTTGAAG ACATTTCACC CGAGGAAACC 
ACAAAAGAAA GCCCATTTAG CAACTATGCA GAAGTCTCTG AAACTAATTC 
CCCCAAAGAA ACTCGCTTGT TTGAGGATGT CTTGCAAAAT GGAGCTGGTC 
CGGCAAATGG TGCCACTGCT TCAGAGGTTT TTCAATCTTT GGGTGGTGGG 
AAAGGAGGGC CGGGTTTATC TGTAGAAGCT TTAGAGAAAA TGATGGAAGA 
TCCAACAGTC CAGAAGATGG TTTACCCATA CTTGCCTGAG GAGATGAGGA 
ACCCAGAAAC TTTCAAATGG ATGCTTAAAA ATCCTCAGTA CCGTCAACAA 
CTACAGGACA TGTTGAATAA TATGAGTGGG AGTGGTGAAT GGGACAAGCG 
AATGACAGAT ACATTGAAGA ATTTTGACCT GAATAGTCCT GAAGTGAAGC 
AACAATTCAA TCAAATAGGA CTAACTCCAG AAGAAGTCAT ATCTAAGATC 
ATGGAGAACC CTGATGTTGC CATGGCATTC CAGAATCCTA GAGTCCAAGC 
AGCGTTAATG GAATGCTCAG AGAACCCAAT GAACATCATG AAGTACCAAA 
ACGACAAAGA GGTAATGGAT GTGTTCAACA AGATATCGCA GCTCTTCCCA 
GGAATGACGG GTTGAAAAAG CTCACGTCTT TGGTTCTATC AAAAATGTCA 
CATTGTCTTT AGCTTTTTGT AGGGAGAAAA AAATGTTTTT TTTTTTTTGC 
AAAGAGTCTT CAGTTTTGGT CAGATCAGAG AATTGTGTAC CATGTTAATC 
TTAAACGCGG TCGGGAATTG GAGTCGTGTG AAAACGCCGC TGCTGTTGTT 
TGGTATGAAT ATTATACAAT AGAATTTGTT GTCTTAC

Gene models with high sequence identity

  1. AT5G16620.1 [+] show detail - hydroxyproline-rich glycoprotein family protein
    E-value: 0; Score: 99.88

 

InterPro Scan Digest

Program Description E-value
HMMPanther HSC70-INTERACTING PROTEIN 1.2e-12
HMMPanther TPR REPEAT CONTAINING PROTEIN 1.2e-12
HMMPfam 26S proteasome complex ubiquitin receptor, subunit Rpn13 8.2e-07
HMMSmart Heat shock chaperonin-binding 0.0017
HMMSmart Heat shock chaperonin-binding 3.4e-08

See the detailed result >

AT5G16620.1

Model type
Protein coding
Short Description
hydroxyproline-rich glycoprotein family protein
Curator Summary
chloroplast protein import (Tic40)
Computational Description
TIC40; INVOLVED IN: protein import into chloroplast stroma, chloroplast organization; LOCATED IN: in 6 components; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock chaperonin-binding (InterPro:IPR006636), 26S proteasome complex ubiquitin receptor, subunit Rpn13 (InterPro:IPR006773); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-07-H09 introduced

  • F18816 - rosette leaf::increased width / rosette leaf::abnormal / cauline leaf::decreased size / stem::abnormal / cauline leaf::abnormal / stem::present in fewer numbers in organism
  • F20134 - rosette leaf::abnormal / stem::abnormal / rosette leaf::increased width / rosette leaf::abnormal / whole plant::decreased height / stem::abnormal / stem internode::decreased length
  • F21014 - rosette leaf::present in greater numbers in organism / stem::desaturated green / fruit::abnormal
  • F27714 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

4 mutant lines found