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RAFL06-07-K18

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda02847)

full reading [+] show sequence

Nucleotide sequence: RAFL06-07-K18 - full reading 
GAGAAACCAC AAATCTCTCT TTCTCTCAAA CTCTCTCAAC AACAACAATG 
GCGTCTCTTC AACAAACTCT ATTCTCTCTT CAATCCAAAC TCCCACCATC 
CTCCTTCCAA ATCGCCAGAT CTCTCCCACT CCGAAAAACC TTCCCAATCC 
GAATCAACAA CGGTGGAAAC GCCGCCGGAG CAAGAATGTC AGCCACCGCA 
GCATCAAGCT ACGCGATGGC ATTAGCAGAC GTCGCGAAAA GAAACGACAC 
AATGGAATTA ACAGTCACAG ACATCGAGAA GCTCGAACAA GTCTTCTCAG 
ATCCACAAGT ACTAAACTTC TTCGCGAATC CAACAATCAC CGTCGAGAAG 
AAACGTCAAG TCATCGACGA CATAGTGAAA TCGTCGTCTC TTCAATCTCA 
CACATCTAAC TTCCTCAACG TCCTCGTCGA CGCGAATCGG ATCAATATCG 
TGACGGAGAT CGTTAAGGAG TTTGAGTTGG TTTACAATAA GCTAACGGAT 
ACACAATTGG CGGAGGTTAG GTCGGTGGTG AAATTGGAAG CGCCGCAATT 
AGCTCAGATT GCGAAACAGG TTCAGAAGTT AACCGGAGCT AAGAATGTTC 
GGGTTAAGAC GGTTATTGAT GCGAGTCTTG TGGCTGGTTT TACGATTCGG 
TATGGTGAAT CCGGTTCGAA GCTTATTGAT ATGAGTGTGA AGAAACAGCT 
TGAAGATATT GCTTCTCAGC TTGAACTTGG TGAGATTCAA TTAGCTACTT 
GAGATTTGGG AAAAATTGTA TAAGAGAAAA ATTTGAGAAT CTTTTTTTTT 
TGTGCAAGTT TAATTTTTTT TCTCAT

Gene models with high sequence identity

  1. AT4G09650.1 [+] show detail - ATP synthase delta-subunit gene
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam ATPase, F1 complex, OSCP/delta subunit 9.6e-44
FPrintScan ATPase, F1 complex, OSCP/delta subunit 2.2e-21
FPrintScan ATPase, F1 complex, OSCP/delta subunit 2.2e-21
FPrintScan ATPase, F1 complex, OSCP/delta subunit 2.2e-21
FPrintScan ATPase, F1 complex, OSCP/delta subunit 2.2e-21
FPrintScan ATPase, F1 complex, OSCP/delta subunit 2.2e-21
HMMPanther ATPase, F1 complex, OSCP/delta subunit 9.6e-55
superfamily ATPase, F1 complex, OSCP/delta subunit 3e-22
HMMTigr ATPase, F1 complex, OSCP/delta subunit 1.5e-31
PatternScan ATPase, F1 complex, OSCP/delta subunit, conserved site 0
HAMAP ATPase, F1 complex, OSCP/delta subunit 18.373
Gene3D ATPase, F1 complex, OSCP/delta subunit 0.000000000000082

See the detailed result >

AT4G09650.1

Model type
Protein coding
Short Description
ATP synthase delta-subunit gene
Curator Summary
Encodes the chloroplast ATPase delta-subunit.
Computational Description
ATP synthase delta-subunit gene (ATPD); FUNCTIONS IN: hydrogen ion transporting ATP synthase activity, rotational mechanism; INVOLVED IN: response to cold, defense response to bacterium, photosynthetic electron transport in photosystem I, photosynthetic electron transport in photosystem II, photosynthesis; LOCATED IN: in 7 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, F1 complex, OSCP/delta subunit, conserved site (InterPro:IPR020781), ATPase, F1 complex, OSCP/delta subunit (InterPro:IPR000711); Has 4372 Blast hits to 4372 proteins in 1436 species: Archae - 0; Bacteria - 2635; Metazoa - 155; Fungi - 114; Plants - 153; Viruses - 0; Other Eukaryotes - 1315 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-07-K18 introduced

  • F06933 - rosette leaf::variegated / cauline leaf::epinastic / sporophyte vegetative stage::decreased speed
  • F16618 - rosette leaf::dark green / rosette leaf::decreased size / rosette leaf::increased width / rosette leaf::abnormal / whole plant::decreased height / seed::present in fewer numbers in organism / rosette leaf::decreased size / rosette leaf::increased width
  • F24520 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

5 mutant lines found