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RAFL06-07-N14

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda02854)

full reading [+] show sequence

Nucleotide sequence: RAFL06-07-N14 - full reading 
ATGCATCACT TGTTTCTCCA TAATAAGAGA GTTTTAAGCA TTTGAAACAA 
AAAAAATGGC TTCCAAGGCT TTGGTTCTGT TGGGTCTCTT TGCTGTTCTT 
CTCGTCGTCT CAGAAGTAGC CGCGGCATCT TCTGCCACAG TGAATTCAGA 
GAGTAAGGAA ACTGTGAAAC CTGATCAACG TGGCTACGGT GACAATGGAG 
GAAATTACAA TAACGGAGGA GGTTACCAGG GAGGAGGGGG TAATTACCAA 
GGAGGAGGAG GTAATTACCA AGGAGGAGGA GGTAATTACC AAGGAGGAGG 
AGGAAGATAC CAAGGAGGAG GAGGACGGTA CCAAGGAGGA GGAGGACGAT 
ACCAAGGAGG CGGTGGGCGA CAAGGAGGAG GGGGAAGTGG GGGAAGTTAC 
TGCCGCCACG GCTGCTGCTA CAGAGGTTAC AACGGCTGCT CAAGATGCTG 
CTCGTATGCC GGAGAAGCTG TTCAGACTCA GCCCGGTCAC TAAAACAATA 
TATTAACCAA TCACCACCAT GCATGTATTG CATTATGTAT GTATGATTTT 
AAGTAAACCA TGGTGCGTTT GTAATGAACT GCCTCAAGTT TTTGAGGCAC 
TATAGATTAA GAAGAGAACT ATGGGAATAA AGTTTGATTA TGTAATGTTT 
TATGTGGTTT GAGTTGTAAT ACTTGCTGTT TGCATAATAA AATCGTTTGT 
AGTTTATGT

Gene models with high sequence identity

  1. AT2G05520.1 [+] show detail - glycine-rich protein 3
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam Glycine rich protein 1e-19
Coil coiled-coil 0

See the detailed result >

AT2G05520.1

Model type
Protein coding
Short Description
glycine-rich protein 3
Curator Summary
Encodes a glycine-rich protein that is expressed mainly in stems and leaves. mRNA levels are upregulated in response to ABA, salicylic acid and ethylene but downregulated in response to dessication.
Computational Description
glycine-rich protein 3 (GRP-3); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to ethylene stimulus, response to desiccation, response to abscisic acid stimulus, response to salicylic acid stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glycine rich protein (InterPro:IPR010800); BEST Arabidopsis thaliana protein match is: glycine-rich protein 3 short isoform (TAIR:AT2G05380.1); Has 67000 Blast hits to 17256 proteins in 1389 species: Archae - 28; Bacteria - 27528; Metazoa - 20984; Fungi - 3299; Plants - 7053; Viruses - 888; Other Eukaryotes - 7220 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-07-N14 introduced

  • F00612 - Specific phenotypes were NOT observed.
  • F12335 - rosette leaf::decreased size / stem::decreased thickness / cauline leaf::epinastic / rosette leaf::decreased size / rosette leaf::epinastic / rosette leaf::abnormal / rosette leaf::increased width / rosette leaf::present in greater numbers in organism / rosette leaf::abnormal / stem::decreased thickness / cauline leaf::abnormal / whole plant::decreased height / fruit::decreased length / stem::present in greater numbers in organism
  • F13938 - Specific phenotypes were NOT observed.
  • F25813 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

5 mutant lines found