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  3. RAFL06-08-A17

RAFL06-08-A17

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda12245)

full reading [+] show sequence

Nucleotide sequence: RAFL06-08-A17 - full reading 
ACACACACTT CTCACTTAAG AAAATGAATA ACTCTTTACA AAGTTCTAAA 
CTTGTGCTTC TATTGGCTAT TGCTTTGGTC CTATTTCTTA ACACGGAGCT 
GGATTTTCTT ACAGCTGCTG GAGCCTTAGA CAGTGATAGC AAAGTTTATA 
TAGTGTATCT TGGCGAAAGA GAACACGATG ATCCTGAACT TGTCACAGCT 
TCTCATCACC AGATGCTTGA ATCACTTCTT CAAAGCAAAG AAGACGCACA 
AAACTCCCTG ATCTACAGCT ACCAACATGG ATTCTCTGGT TTCGCGGCGC 
TTCTTACATC ATCACAAGCT AAGAAAATTT CAGAGCATCC AGAAGTTATC 
CATGTTATAC CAAACCGGAT TCGGAAACTT AAAACCACAA GAGCTTGGGA 
TCACCTTGGC CTCTCTCCAA TTCCAACTTC TTTTTCTTCA TTATCATCTG 
TAAAAGGTCT TCTTCATGAC ACCAACTTGG GCAGTGAAGC TATCATCGGT 
GTCATTGATT CCGGGATATG GCCAGAGTCA AAGGCAGTCA ACGATCAAGG 
CCTTGGACCA ATACCTAAGC GTTGGAGAGG AAAATGTGAA CCTGGAGAAC 
AGTTTAACGC CACAATACAT TGCAACAACA AGCTAATAGG AGCTAGGTAC 
TATCTAAACG GTGTAGTCGC CGCAATTGGA GGAAAATTCA ACAGAACAAT 
CATCCAAGAT TTCCAATCCA CCAGAGATGC AAACGGTCAC GGTACACATA 
CAGCCACAAT AGCTGGTGGC TCATTTGTCC CCAACGTGAG CTACTTTGGT 
TTAGCCCAAG GTCTTGTCCG AGGTGGTGCT CCTCGAGCCC GAATAGCCTC 
GTACAAGGCG TGTTGGAACG TAATGAGAGA TGAAGGAGGA GGAACTGATG 
GAAGATGCAC ATCTGCTGAT ATGTGGAAGG CTTTTGATGA TGCTATACAT 
GATGGGGTTG ATGTTTTGTC GGTTTCTATC GGGGGAGGTA TTCCCGAGGA 
TTCGGAAGTC GATAAGCTCG ATTATATCGC GGCTTTTCAC GCGGTGGCTA 
AAGGGATTAC GGTTGTGGCT GCTGCGGGTA ACGAAGGGCC TGGTGCTCAC 
ACTGTTGACA ATGTTGCTCC TTGGCTTTTG ACTGTTGCTG CAACTACTCT 
TGACCGGTCT TTTCCTACAA AGATCACACT TGGGAATAAT CAAACCCTCT 
TCGCTGAATC TCTGTTCACT GGACCGGAGA TTTCAACCGG TTTAGCTTTC 
TTGGACTCAG ACAGTGATGA CACTGTTGAT GTGAAGGGGA AAACAGTTCT 
TGTTTTCGAT AGTGCAACTC CAATTGCAGG GAAAGGTGTA GCAGCAGTGA 
TCCTAGCCCA AAAGCCTGAT GATCTTCTTT CTCGATGCAA TGGTGTACCA 
TGCATTTTTC CAGATTACGA GTTTGGAACT GAGATTTTAA AATACATACG 
TACCACCAGA TCTCCCACGG TGAGAATTAC TGCAGCTACT ACACTAACTG 
GTCAGCCTGC AACAACTAAG GTTGCTGCAT TCTCATGTAG AGGGCCTAAT 
TCGGTTTCAC CAGCCATTCT CAAGCCTGAT ATAGCAGCTC CGGGTGTGAG 
CATACTCGCG GCAATAAGTC CGCTTAATCC AGAAGAACAG AACGGATTTG 
GACTTCTTTC AGGGACATCA ATGTCAACTC CTGTTGTTTC TGGAATAATA 
GCTCTCCTAA AATCTCTTCA CCCTAAGTGG TCTCCTGCTG CAGTGAGATC 
AGCTTTGGTC ACAACAGCTT GGAGGACAAG TCCATCTGGA GAACCAATCT 
TTGCTGAAGG ATCAAACAAG AAGCTTGCAG ATCCATTTGA CTATGGAGGA 
GGACTTGTAA ACCCTGAAAA AGCTGCTAAA CCAGGACTTG TCTACGATAT 
GGGGATTGTG GATTACATCA AGTATATGTG TTCTGCGGGT TACAACGACT 
CTTCAATCTC TCGTGTGCTC GGTAAAAAGA CTAATTGCCC AATTCCTAAG 
CCATCAATGC TTGATATCAA CTTACCTTCA ATCACAATTC CAAATCTTGA 
GAAAGAAGTC ACACTCACAA GAACTGTAAC CAATGTTGGA CCCATCAAGT 
CAGTCTATAG AGCTGTGATC GAGTCTCCTC TCGGTATAAC TCTCACCGTG 
AACCCAACCA CACTCGTGTT TAAGTCTGCA GCTAAGAGAG TACTCACTTT 
CTCGGTTAAG GCTAAAACAA GTCACAAAGT CAACACTGGC TACTTCTTTG 
GAAGCTTAAC ATGGAGTGAT GGTGTTCATG ATGTTATAAT CCCTGTCTCT 
GTTAAGACAA CGATTTCGAT GTAATAAAAA GAGCCATATG ATGCTCATTG 
TGTTTGTTCT TATGTAATTT GTTGCAAATC TAAGTCTAAA ATGT

Gene models with high sequence identity

  1. AT4G21650.1 [+] show detail - Subtilase family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther SUBTILISIN-LIKE PROTEASE (PLANT) 0
HMMPanther Peptidase S8, subtilisin-related 0
PatternScan Peptidase S8/S53, subtilisin, active site 0
Gene3D Peptidase S8/S53, subtilisin/kexin/sedolisin 2.9e-67
FPrintScan Peptidase S8/S53, subtilisin/kexin/sedolisin 0.0000000000017
FPrintScan Peptidase S8/S53, subtilisin/kexin/sedolisin 0.0000000000017
FPrintScan Peptidase S8/S53, subtilisin/kexin/sedolisin 0.0000000000017
HMMPfam Peptidase S8/S53, subtilisin/kexin/sedolisin 5.6e-33
HMMPfam Proteinase inhibitor I9, subtilisin propeptide 1.5e-21
HMMPfam Protease-associated PA 0.0000076
superfamily Peptidase S8/S53, subtilisin/kexin/sedolisin 3.3e-73
superfamily Proteinase inhibitor, propeptide 0.00000058

See the detailed result >

AT4G21650.1

Model type
Protein coding
Short Description
Subtilase family protein
Computational Description
Subtilase family protein; FUNCTIONS IN: identical protein binding, serine-type endopeptidase activity; INVOLVED IN: proteolysis, negative regulation of catalytic activity; LOCATED IN: plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Proteinase inhibitor, propeptide (InterPro:IPR009020), Peptidase S8/S53, subtilisin/kexin/sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Peptidase S8/S53, subtilisin, active site (InterPro:IPR022398), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259); BEST Arabidopsis thaliana protein match is: Subtilase family protein (TAIR:AT4G21630.1); Has 7770 Blast hits to 6733 proteins in 1165 species: Archae - 228; Bacteria - 4634; Metazoa - 31; Fungi - 250; Plants - 1972; Viruses - 0; Other Eukaryotes - 655 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-08-A17 introduced

  • F04325 - Specific phenotypes were NOT observed.
  • F05238 - Specific phenotypes were NOT observed.
  • F05308 - stem::increased thickness / stem::dark green

Mutant lines with disrupted or induced

4 mutant lines found