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RAFL06-08-D11

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda02875)

full reading [+] show sequence

Nucleotide sequence: RAFL06-08-D11 - full reading 
AAATCACTAA TCATCGATTC TTCTCCGTTG GATCAAAGAC AATAAAACAT 
CTGAAGGTAT TGTATCCGAA GAAACTCCCA TGGATGCTTC TCAGGAGCAA 
CAACATGAAA CAGTTGAGGA GATGCTTGCT CGCCACAGGC AAGAGATTAA 
ACAACTTCAA AACAAAGAGA CAGAGATGAA GAAGGCAGCT GCCAAAGGTA 
GCAAAGCTGA ACAAAAAGCT AAGAAGAAGC AAGTCGAAGA TGACATTTCC 
AAACTCTCCA CTAAGCTCAA GGACAAACAG TTGAAAGAAC TCGCCTCTCA 
AGGTTTCAGC AGCAGCAGCA GCAACAACAT TGCCAAGGAC GAAACGACTG 
AGAAAAAAGG AGACATCGAC ACTCTAGTTA GAGCTATAGC TGGAGTCTCA 
GTCACTGCTC AGCAAGAGCA CTCAAAGCCT AGCAAGAGCG TGAAGAGGCG 
CGAGAAACGG GCTAAGGAAG AAGCAGACAG AGAGCAGAGA ATTAAAGAGG 
AGCAAAGCCA CGTGAAAAGT GATCGTATGG TTGAGAACGC CAAGCTTGAG 
AAGAAGCTTA AACCATTGGG ATTAACAGTC AGTGAGATTA AACCAGACGG 
ACATTGCCTT TACCGTGCTG TTGAGAATCA GCTTGCCAAC CGCTCGGGCG 
GTGCATCTCC TTACACATAC CAGAATCTAA GAGAAATGGC TGCTTCGTAC 
ATGAGAGAGC ACAAAACCGA CTTTCTCCCG TTTTTCTTGT CAGAGACTGA 
GGGTGACTCC AACAGTGGAT CTGCAGAAGA GCGGTTTGAG AAATACTGCA 
GAGAAGTCGA GTCAACCGCT GCTTGGGGCA GTCAATTGGA GCTTGGAGCA 
TTAACACATT GCTTGAGGAA ACACATAAAG GTGTATTCGG GATCGTTTCC 
GGATGTTGAG ATGGGCAAAG AGTATAGATC CGGCGATGAC TCGAGCCTCA 
TGTTATCGTA TCACAGGCAT GCTTTTGGGC TCGGGGAGCA TTATAACTCA 
GTGGTGCTCG TCAACAACAT CACCGGATGA TGGATGATGG ACTTTATCTA 
AAGCTTTAAG AAAAGTGCTT TTGTATCAAA AGTTTACTGA AATTCTTTCT 
TCTTTAATGT TTGTTGGATT TGAGAGAACC AATGTGTAAC TTCAATTTTT 
CATTTGGTTA CAAGGCGAAG CATAATCTAT TGCTAC

Gene models with high sequence identity

  1. AT3G62940.1 [+] show detail - Cysteine proteinases superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
ProfileScan Ovarian tumour, otubain 27.157
HMMPfam Ovarian tumour, otubain 2.5e-26
HMMPanther OTU DOMAIN CONTAINING PROTEIN 8.7e-49
superfamily Cysteine proteinases 5.8e-33
Coil coiled-coil 0
Coil coiled-coil 0

See the detailed result >

AT3G62940.1

Model type
Protein coding
Short Description
Cysteine proteinases superfamily protein
Computational Description
Cysteine proteinases superfamily protein; CONTAINS InterPro DOMAIN/s: Ovarian tumour, otubain (InterPro:IPR003323); BEST Arabidopsis thaliana protein match is: SEC-C motif-containing protein / OTU-like cysteine protease family protein (TAIR:AT5G67170.1); Has 4424 Blast hits to 3467 proteins in 474 species: Archae - 10; Bacteria - 494; Metazoa - 1270; Fungi - 452; Plants - 292; Viruses - 20; Other Eukaryotes - 1886 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-08-D11 introduced

  • F02737 - seed::increased size
  • F05415 - seed::increased size / seed::increased length
  • F06031 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

6 mutant lines found