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RAFL06-08-D19

RIKEN Arabidopsis Full-length cDNAs

Resource: (pdz87556)

5 prime EST [+] show sequence

Nucleotide sequence: RAFL06-08-D19 - 5 prime EST 
GAGGAGTTCT CACAACAAGA TCGAGAAATA CACACATAGA AGACGAAGAA 
GAAGAAGAAG ACGATACAGA TCCACAACGC CATGGGTTTA GGCATCTTAG 
CTTCTCGAAC AATTCGACCA GCTTCACGTC TTCTTCAATC TCAAACCTCC 
AATTTCTTCC TCCGCACAAT CGTCTCAAAA CCAGAGCTCC AATCTCCTGA 
ATCCGCTGCT GTCTCTGAGC CTGAGCCGCC GACACAGATT CTCCCTCCTA 
GAAACCCTGT AGGTGGAGCA CGCGTCCACT TNTCGAATCC TGAAGATGCG 
ATCGAGGNCT TTGTCGATGG TTACGCGGTC AAAGTTCCTA AAGGATTCAC 
TGNTCTTCAG GCTTGTGAGG

Gene models with high sequence identity

  1. AT5G37510.2 [+] show detail - NADH-ubiquinone dehydrogenase, mitochondrial, putative
    E-value: 0; Score: 98.92

3 prime EST [+] show sequence

Nucleotide sequence: RAFL06-08-D19 - 3 prime EST 
CGAATCTAAC AATGTGCTTA TTGCAAATTG CTTATAGATT TCACCGCAAG 
CTAAACCCGA GATACAGTGA TACTCAGGCT TAAACAAAGG GTCTATAAAG 
AGGACAGCAA ACGAAGAATC AGTATCTTTA TTTTTGCGAA AAGAGAGAAA 
ATGTGAAAAC CCAAGTTAAA GCTCTCACTT TTTCAAGAGC ACGGCACTGC 
ACTGCGCCAT GATCTTTGAT GCTCTTGTGA TCGAGTTTGT CATGTAAAAG 
TTCTCAACCA CGGTTTGGAA CGGTGTTGTG CTCATTGCCT CCTTGCACTC 
AGGCTTCAAT GAAGGCCCAA AAGCAGCTGG CTCTCGCTCA TCTGTGTGGA 
CTAGATTTGG TGCAACGCTC TTTATTCTTG ATCTAACACC TTCGATTGAG 
TTGTATGGAA GCTTCACACC CGAGACCTCG GATAAGGCTC TCACAATCTT 
CCAGTCATCT CTTGCATCAC CAACTGTTGG AACAGCTGGA ACAGTCTGTT 
GGGTAAATCC TTCAGTATTT TCATAGGTTC CTTCTTTCTC AGTGAAGGCC 
GATGCAGGGG AGAATTACGT TGCACGGTAA ACCGCTTTGT CTCCATGGTG 
TCCCTTGG

Gene models with high sequence identity

  1. AT5G37510.1 [+] show detail - NADH-ubiquinone dehydrogenase, mitochondrial, putative
    E-value: 0; Score: 99.50

AT5G37510.1

Model type
Protein coding
Short Description
NADH-ubiquinone dehydrogenase, mitochondrial, putative
Curator Summary
Encodes a subunit of the 400 kDa subcomplex of the mitochondrial NADH dehydrogenase (complex I). The protein has been isolated in the male gametophyte.
Computational Description
embryo defective 1467 (EMB1467); FUNCTIONS IN: in 6 functions; INVOLVED IN: response to oxidative stress, photorespiration, embryo development ending in seed dormancy; LOCATED IN: mitochondrion, mitochondrial membrane, chloroplast, mitochondrial respiratory chain complex I, respiratory chain complex I; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding (InterPro:IPR019574), NADH:ubiquinone oxidoreductase, subunit G (InterPro:IPR010228), Molybdopterin oxidoreductase (InterPro:IPR006656), Ferredoxin (InterPro:IPR001041), NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site (InterPro:IPR000283), NADH-quinone oxidoreductase, chain G, C-terminal (InterPro:IPR015405); Has 12426 Blast hits to 11022 proteins in 2097 species: Archae - 340; Bacteria - 6853; Metazoa - 215; Fungi - 114; Plants - 76; Viruses - 0; Other Eukaryotes - 4828 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G37510.2

Model type
Protein coding
Short Description
NADH-ubiquinone dehydrogenase, mitochondrial, putative
Curator Summary
Encodes a subunit of the 400 kDa subcomplex of the mitochondrial NADH dehydrogenase (complex I). The protein has been isolated in the male gametophyte.
Computational Description
embryo defective 1467 (EMB1467); FUNCTIONS IN: in 6 functions; INVOLVED IN: response to oxidative stress, photorespiration, embryo development ending in seed dormancy; LOCATED IN: mitochondrion, mitochondrial membrane, chloroplast, mitochondrial respiratory chain complex I, respiratory chain complex I; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding (InterPro:IPR019574), NADH:ubiquinone oxidoreductase, subunit G (InterPro:IPR010228), Molybdopterin oxidoreductase (InterPro:IPR006656), Ferredoxin (InterPro:IPR001041), NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site (InterPro:IPR000283), NADH-quinone oxidoreductase, chain G, C-terminal (InterPro:IPR015405); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-08-D19 introduced

  • F18646 - Specific phenotypes were NOT observed.
  • F25042 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found