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RAFL06-08-E07

RIKEN Arabidopsis Full-length cDNAs

Resource: (pdz87557)

5 prime EST [+] show sequence

Nucleotide sequence: RAFL06-08-E07 - 5 prime EST 
GGTTTTGGTA GCTCAGACTC AGAGAGTCAC AAAGTGTGTG TAGCAGCAAT 
GGCGTCTGTT GCTTCTTCAA CTACTCTCAT CTCTTCTCCC TCTTCTAGGG 
TTTTTCCAGC AAAGTCTTCA CTTTCCTCTC CATCTGTTTC TTTCCTTCGA 
ACCCTTTCTT CTCCTTCCGC ATCTGCTTCT CTCCGCTCCG GATTTGCTCG 
ACGCTCTTCC CTCAGCTCCA CTTCTCGTCG GAGCTTTGCT GTCAAAGCCC 
AGGCCGATGA TCTTCCACTG GTTGGAAACA AGGCGCCTGA TTTTGAGGCA 
GAGGCTGTGT TTGATCAAGA GTTCATCAAG GTTAAGCTCT CTGATTACAT 
TGGAAAGAAG TATGTGATTC TCTTTTTCTA CCCATTGGAC TTTACTTTCG 
TCTGCCCAAC AGAGATTACT GCCTTCAGTG ACCGGCATTC AGAATTTGAG 
AAGTTGAACA CCGAAGTATT AGGTGTTTCT GTCGATAGTG TGTTCTCTCA 
CCTTGCATGG GTCCAAACAG ACAGGAAATC TGGAGGGCTT GGTGATCTGA 
ACTATCCCCT TATTTTCAGA TGTCCCTAAA TCAATCTCAA AGTCGTTCGG 
AGNGCTCATC CNTGATCAGG GAATAGCACT GAGAGGACTT TTCATATTCG 
ACAAGGAANG AGGGATCCAA CATCCC

Gene models with high sequence identity

  1. AT3G11630.1 [+] show detail - Thioredoxin superfamily protein
    E-value: 0; Score: 98.96

3 prime EST [+] show sequence

Nucleotide sequence: RAFL06-08-E07 - 3 prime EST 
AGCGGAAAAA GTTTTTTATT ATAATTTTGG GGACAAAGTG AGAATCAAAC 
AAAGGATTGT TTTAGCAGTA CAAGAAAAAA AACTCTGCTC ACATATAACA 
AAGATTGTAC CTCTTTTGCT ATCATAGTAG AGTTTCTAAA TAGCCTGAGA 
AGTACTCTTT GCTGAGTTTT GGGTCGGGTT TCATTGACTT CTCACCCGGC 
TTCCATCCTG CTGGGCAGAC TTCATCCGGG TTTTCCTGGA TGTACTGTAA 
TGCCTGGAGG GTTCTCATTG TCTCATCAAC GCTTCGGCCA ATACCAAGAT 
TGTTGATGGT GGAATGTTGG ATCACTCCTT CCTTGTCGAT TATGAAAAGT 
CCTCTCAGTG CTATTCCCTG ATCATGGATG AGCACTCCGA ACGACTTTGA 
GATTGATTTA GTGACATCTG AAATAAGGGG ATAGTTCAGA TCACCAAGCC 
CTCCAGATTT CCTGTCTGTT TGGACCCATG CAAGGTGAGA GAACACACTA 
TTCGACAGAA ACACCTAATA CTTCGGTGGT CAACTTCTCA AATTCTGA

Gene models with high sequence identity

  1. AT3G11630.1 [+] show detail - Thioredoxin superfamily protein
    E-value: 0; Score: 99.08

AT3G11630.1

Model type
Protein coding
Short Description
Thioredoxin superfamily protein
Curator Summary
Encodes a 2-Cys peroxiredoxin (2-Cys PrxA) that contains two catalytic Cys residues.
Computational Description
Thioredoxin superfamily protein; FUNCTIONS IN: peroxiredoxin activity, antioxidant activity; INVOLVED IN: response to cold, defense response to bacterium; LOCATED IN: in 6 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peroxiredoxin, C-terminal (InterPro:IPR019479), Thioredoxin fold (InterPro:IPR012335), Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen (InterPro:IPR000866), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: 2-cysteine peroxiredoxin B (TAIR:AT5G06290.1); Has 16794 Blast hits to 16794 proteins in 2739 species: Archae - 621; Bacteria - 10920; Metazoa - 1157; Fungi - 359; Plants - 398; Viruses - 0; Other Eukaryotes - 3339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-08-E07 introduced

  • F05901 - Specific phenotypes were NOT observed.
  • F06123 - seed::increased length
  • F06535 - Specific phenotypes were NOT observed.
  • F20913 - seed::increased size
  • F21532 - Specific phenotypes were NOT observed.
  • F29141 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

9 mutant lines found