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  3. RAFL06-08-F07

RAFL06-08-F07

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda02880)

full reading [+] show sequence

Nucleotide sequence: RAFL06-08-F07 - full reading 
ACAGCACCAC AAACTCCATA GCTAGCTAGA GAGTAAAAAG AACAAAGATG 
TCGAAAGAAG TGAGCGAAGA AGGCAAAACC CACCATGGAA AAGACTACGT 
GGATCCTCCA CCAGCTCCTC TTCTCGACAT GGGTGAGCTC AAATCCTGGT 
CTTTCTACAG AGCTCTCATC GCTGAGTTCA TCGCTACACT CCTCTTCCTC 
TACGTCACCG TCGCTACTGT CATCGGCCAC AAGAAGCAAA CCGGTCCTTG 
TGACGGCGTT GGTTTACTTG GTATCGCTTG GGCTTTCGGT GGTATGATCT 
TCGTCCTCGT CTACTGCACC GCCGGTATCT CTGGTGGTCA CATTAACCCA 
GCTGTGACTT TCGGTCTGTT CTTGGCCCGT AAGGTCTCTT TGGTGCGAGC 
TCTTGGTTAC ATGATAGCTC AGTGTCTTGG AGCCATTTGT GGTGTGGGTT 
TCGTGAAAGC TTTCATGAAA ACTCCTTACA ACACTCTTGG TGGAGGAGCT 
AACACCGTAG CTGACGGTTA CAGCAAAGGA ACTGCTCTCG GAGCTGAGAT 
TATTGGAACT TTCGTCCTTG TTTACACCGT TTTCTCTGCA ACTGACCCTA 
AGAGAAGCGC TCGTGACTCT CACATCCCCG TTTTGGCTCC ACTTCCAATT 
GGATTTGCTG TGTTCATGGT GCATTTGGCT ACTATCCCCA TTACTGGAAC 
TGGTATCAAC CCAGCTAGAA GCTTTGGTGC TGCTGTTATC TACAACAACG 
AGAAGGCGTG GGATGACCAA TGGATCTTTT GGGTTGGTCC GTTCTTGGGA 
GCACTAGCTG CAGCAGCTTA CCACCAATAC ATATTGAGAG CTTCAGCAAT 
TAAGGCCTTG GGCTCGTTCC GAAGCAACGC AACCAATTAA TGAAGGCTTT 
TTTTAAGATA ATGTCAAGAA ACAACTTTAA GATTTATATG CTTTAATTAT 
TATTTGTTGT TCTTTTGTGT GTAATGAGAG AGATGGTGGA TTGATGTTAA 
TTATGAAATG GCTCAGTGAC TTCTATTTCC TTCTTT

Gene models with high sequence identity

  1. AT4G35100.1 [+] show detail - plasma membrane intrinsic protein 3
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMTigr Aquaporin 2.3e-86
HMMPanther AQUAPORIN-RELATED 3e-190
HMMPanther Major intrinsic protein 3e-190
Gene3D Major intrinsic protein 3.1e-65
PatternScan Major intrinsic protein, conserved site 0
HMMPfam Major intrinsic protein 2.6e-84
superfamily Major intrinsic protein 2.6e-62
FPrintScan Major intrinsic protein 2.7e-70
FPrintScan Major intrinsic protein 2.7e-70
FPrintScan Major intrinsic protein 2.7e-70
FPrintScan Major intrinsic protein 2.7e-70
FPrintScan Major intrinsic protein 2.7e-70
FPrintScan Major intrinsic protein 2.7e-70

See the detailed result >

AT4G35100.1

Model type
Protein coding
Short Description
plasma membrane intrinsic protein 3
Curator Summary
a member of the plasma membrane intrinsic protein PIP. functions as aquaporin. Salt-stress-inducible MIP
Computational Description
plasma membrane intrinsic protein 3 (PIP3); FUNCTIONS IN: water channel activity; INVOLVED IN: response to salt stress, transport; LOCATED IN: anchored to plasma membrane, nucleus, plasma membrane, vacuole, membrane; EXPRESSED IN: guard cell, cultured cell, callus, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Major intrinsic protein, conserved site (InterPro:IPR022357), Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: plasma membrane intrinsic protein 2;8 (TAIR:AT2G16850.1); Has 10883 Blast hits to 10871 proteins in 2222 species: Archae - 81; Bacteria - 5172; Metazoa - 1469; Fungi - 457; Plants - 2516; Viruses - 2; Other Eukaryotes - 1186 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-08-F07 introduced

  • F08711 - Specific phenotypes were NOT observed.
  • F27713 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

7 mutant lines found