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RAFL06-08-I23

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda02894)

full reading [+] show sequence

Nucleotide sequence: RAFL06-08-I23 - full reading 
GCATAACAAA TTTAGAGCGA GCAATAATGA GGGTTTCTCA ATCTCTAATC 
CCTTTTGCCA TAATTGCTTT GGTCCTTTCC TTTGTCAATG CTTATGATCC 
AAGTCCACTC CAAGACTTCT GTGTTGCCAT TGATGACCTA AAAGGCGTTT 
TTGTGAATGG TAGGTTTTGT AAAGACCCGG AGCGAGTCGA TGCAAAAGAT 
TTTTTCTTCT CAGGTCTCAA TGTGCCCGGG AACACCAATA ATCAAGTTGG 
CTCTAATGTG ACCACTGTTA ATGTTGATCA GATCCCCGGG CTAAACACCA 
TGGGAATATC ATTGGTCCGC ATAGACTACG CACCGCATGG CCAAAATCCA 
CCTCACACGC ACCCTCGTGG CTCAGAGATC CTTGTCCTTG TCGAAGGAAC 
ATTATACGTC GGTTTTGTCT CTTCCAATCA AGATAACAAC CGGTTATTCG 
CCAAAGTATT GCACCCCGGT GATGTTTTTG TGTTCCCCAT AGGAATGATC 
CATTTTCAGT TAAATATCGG GAAAATTCCA GCAATTGCTT TTGCGGGATT 
GAGTAGCCAG AACGCTGGTG TTATCACAAT TGCAAACACT GTGTTCGGGT 
CAAACCCTCC GATTTATCCA GAGCTTCTTG CCAGGGCGTT CCAGTTGGAT 
GCAAATGTTG TCAAAGAACT TCAAGCCAAG TTTGGGTCCA TATGAACTGA 
TCATCTAAGT CGTTTAAGAG TGTTTATCAT TGAAACACAA ATTAAAGGAA 
TACACTACTA TGAAATATTT ATGTAACAAA GTAAAAATGG CTTATGTACC 
TATTTCTATA TTATAATATA ACAACTTTAA T

Gene models with high sequence identity

  1. AT5G39130.1 [+] show detail - RmlC-like cupins superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
Gene3D RmlC-like jelly roll fold 8e-80
superfamily Cupin, RmlC-type 2e-54
PatternScan Germin, manganese binding site 0
HMMSmart Cupin 1 2e-27
FPrintScan Germin 2e-25
FPrintScan Germin 2e-25
FPrintScan Germin 2e-25
HMMPfam Cupin 1 6.8e-28

See the detailed result >

AT5G39130.1

Model type
Protein coding
Short Description
RmlC-like cupins superfamily protein
Computational Description
RmlC-like cupins superfamily protein; FUNCTIONS IN: manganese ion binding, nutrient reservoir activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, apoplast; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), Germin (InterPro:IPR001929), Germin, manganese binding site (InterPro:IPR019780); BEST Arabidopsis thaliana protein match is: germin-like protein 2 (TAIR:AT5G39190.1); Has 1495 Blast hits to 1489 proteins in 85 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 27; Plants - 1451; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-08-I23 introduced

  • F12930 - Specific phenotypes were NOT observed.
  • F15628 - seed::increased size / seed::increased length
  • F17811 - seed::increased size / seed::increased length
  • F30529 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found