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Full-length cDNAs
RAFL06-08-J12

RAFL06-08-J12

RIKEN Arabidopsis Full-length cDNAs

AAAAAAAAAA AAGATAAATC CAGAAAAAAA TTTACAAAAT AAAAAAATAA 
AAATCTCTAT CTTCTTCTTC GTCTCTTCTC ATCCTCCTCT CAAGCTCCAA 
TGGCGAGAGT TCTAGTCTCG TCTCCATCTT CATTCTTCGG TTCACCGTTG 
ATTAAACCGT CGTCATCTCT CCGTCACAGT GGAGTAGGAG GAGGAGGAAC 
CGCTCAATTT CTTCCATACC GGAGTAATAA TAACAAACTC TTCACTACTT 
CAACCACCGT ACGATTCAGC TTAAACGAGA TTCCTCCTTT CCATGGCTTG 
GATTCATCTG TAGACATCGG AGCGATTTTC ACCAGAGCTG AATCTCTTCT 
CTATACAATA GCTGACGCCG CCGTTGTTGG TGCTGATTCC GTCGTAACTA 
CTGATTCATC CGCCGTGCAG AAGAGTGGTG GTTGGTTTGG TTTTATCTCC 
GATGCTATGG AATTGGTTCT TAAGATTTTG AAGGATGGAT TATCAGCGGT 
TCATGTACCT TATGCTTATG GATTTGCGAT TATCTTGCTT ACGATTATCG 
TCAAAGCAGC GACGTATCCT TTGACTAAGC AACAGGTTGA ATCAACACTA 
GCGATGCAAA ATCTTCAACC GAAAATCAAA GCGATTCAAC AACGTTACGC 
AGGAAATCAG GAGAGGATAC AACTAGAGAC ATCGCGATTG TATAAACAAG 
CTGGTGTTAA TCCGTTGGCA GGTTGCTTAC CAACTTTAGC AACCATACCA 
GTTTGGATTG GTTTATACCA AGCTCTCTCT AACGTGGCCA ACGAGGGATT 
GTTTACAGAA GGTTTCTTTT GGATTCCATC TCTGGGTGGA CCAACATCTA 
TAGCTGCTCG GCAGAGTGGA TCCGGCATTT CGTGGCTTTT TCCGTTTGTG 
GACGGGCATC CACCATTGGG ATGGTATGAC ACTGTAGCTT ATCTTGTTCT 
ACCTGTTCTA CTTATTGCCT CCCAGTATGT GTCAATGGAA ATTATGAAGC 
CTCCTCAAAC TGATGATCCT GCACAGAAGA ATACGCTTCT TGTTTTCAAG 
TTTCTTCCAC TCATGATCGG TTACTTTGCA TTGTCTGTCC CATCAGGACT 
ATCTATTTAC TGGCTCACAA ATAATGTACT TAGTACCGCC CAACAAGTAT 
ATCTGCGTAA ACTAGGTGGT GCAAAGCCAA ATATGGATGA AAACGCAAGC 
AAAATAATAA GTGCGGGACG AGCAAAGAGA TCTATTGCTC AGCCTGACGA 
TGCTGGCGAA AGATTTAGAC AATTAAAAGA GCAAGAGAAG CGCAGCAAGA 
AGAACAAGGC GGTTGCGAAA GATACAGTTG AATTGGTAGA AGAATCTCAG 
TCTGAATCAG AAGAAGGGTC TGATGATGAG GAAGAAGAGG CTCGTGAAGG 
AGCGTTAGCT TCGAGCACAA CAAGCAAGCC GCTTCCTGAG GTTGGCCAAC 
GAAGAAGCAA AAGATCGAAG CGGAAACGCA CTGTATAGAA CCAAAGCAAA 
CGAAATTGCA AGTAAGGAAG AGAAAAGAGA GAGATTTGAA TCTTGTTCCT 
TAGTTTGATC TTTTGATATA TATTTGCATA CACCATGTCC GGTAATTATC 
TAATATTAGG GCACAAAAAG GTCATTCTAA AGTTAAAAGC AGTAGTTGAT 
CAAAGTAAAT TGTTTATGTG ATTCATCTTA TTATAAATGT ATTAACGTAA 
ATGTGTGTAC TATTATGACT TTTCAACATG CCCGCTTCAG TTTTGTTAC

Gene models with high sequence identity

AT2G28800.1 [+] show detail - 63 kDa inner membrane family protein
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	INNER MEMBRANE ALBINO3-LIKE PROTEIN 1, 2, CHL	3.9e-197
HMMPanther	Membrane insertion protein, OxaA/YidC	3.9e-197
HMMPfam	Membrane insertion protein, OxaA/YidC	2.1e-59
HMMTigr	Membrane insertion protein, OxaA/YidC, core	2.5e-74

See the detailed result >

AT2G28800.1

Model type: Protein coding
Short Description: 63 kDa inner membrane family protein
Curator Summary: member of Chloroplast membrane protein ALBINO3 family. Similar to pea PPF1 and may play a role in plant senescence.
Computational Description: ALBINO 3 (ALB3); FUNCTIONS IN: P-P-bond-hydrolysis-driven protein transmembrane transporter activity; INVOLVED IN: protein import into chloroplast thylakoid membrane, thylakoid membrane organization, regulation of cell aging; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Membrane insertion protein, OxaA/YidC (InterPro:IPR001708), Membrane insertion protein, OxaA/YidC, core (InterPro:IPR020001); BEST Arabidopsis thaliana protein match is: OxaA/YidC-like membrane insertion protein (TAIR:AT1G24490.1); Has 8837 Blast hits to 8795 proteins in 2578 species: Archae - 0; Bacteria - 5819; Metazoa - 151; Fungi - 71; Plants - 148; Viruses - 0; Other Eukaryotes - 2648 (source: NCBI BLink).
Link: InterPro Scan - TAIR

Mutant lines with RAFL06-08-J12 introduced

F05420 - rosette leaf::desaturated green / rosette leaf::decreased size / rosette leaf::increased width / rosette leaf::present in greater numbers in organism / cauline leaf::decreased size / whole plant::decreased height / sporophyte vegetative stage::decreased speed / seed::present in fewer numbers in organism

Mutant lines with disrupted or induced

3 mutant lines found