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  3. RAFL06-08-K09

RAFL06-08-K09

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda02897)

full reading [+] show sequence

Nucleotide sequence: RAFL06-08-K09 - full reading 
TGACTCTCTC TGCGTCCAAA TTTTGATCTT TGTTCTTCTC AAAGCGAATA 
TGGTTTTCAA GGTTTCTACC GTATCCACAT CTCCTATTGA TGGCCAGAAA 
CCAGGAACTT CTGGTCTTCG TAAGAAGGTG AAAGTGTTCA AGCAACCCAA 
TTATCTAGAG AATTTTGTCC AAGCAACATT CAATGCTCTT ACGGCGGAGA 
AAGTTAAAGG TGCCACACTT GTGGTCTCTG GTGATGGTCG TTATTACTCA 
AAGGATGCTG TTCAGATCAT AATTAAGATG GCAGCAGCTA ATGGTGTACG 
ACGTGTGTGG GTTGGTAAAA ACACTCTGTT ATCAACTCCT GCTGTATCAG 
CTGTGATTCG TGAAAGATCA GGGGCTGATG GATCGAAAGC AACTGGAGCA 
TTTATCTTAA CAGCAAGCCA CAATCCTGGT GGCCCTACTG AGGATTTTGG 
AATCAAATAC AATATGGAAA ATGGAGGACC TGCTCCTGAA TCAATCACTG 
ATAAAATTTA CGAGAACACT AAGACAATCA AGGAGTACCC AATAGCACAA 
GATCTACCCA ATGTTGATAT TTCTGCTGTT GGTGTAACCA GTTTTGAAGG 
ACCTGAAGGA AAATTTGATG TTGAAGTTTT TGATCCCGCA GATGACTACG 
TTAAATTAAT GAAGTCAATC TTCGATTTTG AAGCCATCCG GAAATTGCTA 
TCATCTCCAA AGTTTACATT CTGCTATGAT GCATTGCATG GAGTTGCTGG 
AGCCTATGCA CATCGCATCT TTGTCGAAGA ACTCGGTGCG CAAGAAAGCG 
CATTATTGAA CTGCACTCCC AAGGAGGACT TTGGAGGAGG GCATCCGGAT 
CCCAATTTGA CCTATGCTAA GGAGCTTGTG GCACGAATGG GATTAGGTAA 
ATCCGACACT GGAGGTGAAC CTCCAGAGTT TGGCGCCGCT GCTGATGGTG 
ATGCAGACCG TAACATGATC CTTGGTAAAA GGTTCTTTGT AACTCCTTCG 
GATTCAGTTG CCATAATTGC TGCAAATGCT ATTGGTGCCA TCCCGTACTT 
CAGCTCTGGT TTGAAAGGTG TTGCAAGGAG CATGCCAACC TCAGCTGCTC 
TTGATGTCGT TGCAAAAAGC TTGAATTTGA AGTTCTTTGA GGTTCCAACA 
GGCTGGAAGT TTTTTGGTAA TCTGATGGAT GCTGGGATGT GTTCTGTTTG 
TGGAGAAGAA AGTTTTGGAA CTGGCTCGGA TCATATCCGT GAGAAAGACG 
GAATATGGGC AGTTCTTGCA TGGATGTCTA TACTTGCTCA CAAGAACAAG 
GGAAATATTG ACGGTAACGC TAAACTGGTG TCAGTTGAAG ACATTGTCCG 
CCAGCATTGG GCTACCTACG GTCGTCACTA TTACACTCGT TACGACTATG 
AGAATGTAGA CGCAGGTAAA GCTAAGGAAC TGATGGAGCA TTTGGTCAAA 
TTGCAATCTT CAATTCCTGA AGTTAACAAG ATTGTGAAAG GAATTCGTTC 
GGACGTGGCA AGCGTCGCCA GTGCTGATGA ATTCGAGTAC AAAGATCCAG 
TTGATGGATC CATTTCGAAG CACCAGGGAA TCCGTTACTT GTTTGAAGAC 
GGATCACGAC TTGTTTTCCG TCTCTCTGGA ACTGGCTCAG AAGGAGCAAC 
CATCCGGCTT TACATCGAAC AGTACGAAAA GGATGCTTCA AAAACCGGCC 
GAGAATCCCA GGAAGCTTTG TCTCCTCTGG TTGACTTAGC TCTAAAGCTG 
TCGAAGATGG AAGAGTTCAC AGGCCGATCA GCCCCCACCG TCATAACATA 
AGAAGGGTCA AGCTCAACGA CTCAAACCAT TCACCTTTTC GTCTATATGA 
TGTTTTCTTC TTATACTATC CAAGTTACAT TATAAGAATA ATTAGTCTCA 
GGGAGAATTT GTATTTCTCA TCAGAATTCT GAACAACCAA GACTGATTTC 
TTGAGTTGTT GTGAGGCTTA TACTTGTACG GATTTGGCTT TCTCAGTTTT 
GTTCTCTCTT GTTTCCGTAT TTTGGCGAGT ATACTCTCTT AACAT

Gene models with high sequence identity

  1. AT1G23190.1 [+] show detail - Phosphoglucomutase/phosphomannomutase family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
Gene3D Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III 3.4e-58
Gene3D Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III 5.2e-42
Gene3D Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III 6.9e-37
Gene3D no description 3.6e-61
HMMPfam Alpha-D-phosphohexomutase, alpha/beta/alpha domain I 2.5e-36
HMMPfam Alpha-D-phosphohexomutase, alpha/beta/alpha domain III 6e-26
HMMPfam Alpha-D-phosphohexomutase, alpha/beta/alpha domain II 0.00000000000014
HMMPfam Alpha-D-phosphohexomutase, C-terminal 0.000000000023
superfamily Phosphoglucomutase, C-terminal domain 1.7e-54
superfamily Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III 4.1e-53
superfamily Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III 3.6e-40
superfamily Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III 2.3e-37
FPrintScan Alpha-D-phosphohexomutase, N-terminal 3.2e-22
FPrintScan Alpha-D-phosphohexomutase, N-terminal 3.2e-22
FPrintScan Alpha-D-phosphohexomutase, N-terminal 3.2e-22
FPrintScan Alpha-D-phosphohexomutase, N-terminal 3.2e-22
PatternScan Alpha-D-phosphohexomutase, conserved site 0
HMMPanther PHOSPHOGLUCOMUTASE 2.9e-224
HMMPanther PHOSPHOHEXOMUTASE FAMILY MEMBER 2.9e-224

See the detailed result >

AT1G23190.1

Model type
Protein coding
Short Description
Phosphoglucomutase/phosphomannomutase family protein
Curator Summary
Encodes a cytosolic phosphoglucomutase (PGM). Two Arabidopsis PGM proteins (AT1G70730/PGM2 and AT1G23190/PGM3) have high sequence similarities and redundant functions. Mature plants possessing a single cPGM allele had a major reduction in cPGM activity. Whereas pgm2 and pgm3 single mutants are undistinguishable from the wild type, loss of both PGM2 and PGM3 severely impairs male and female gametophyte development.
Computational Description
Phosphoglucomutase/phosphomannomutase family protein; FUNCTIONS IN: intramolecular transferase activity, phosphotransferases, magnesium ion binding, phosphoglucomutase activity; INVOLVED IN: response to cadmium ion, carbohydrate metabolic process; LOCATED IN: cytosol, nucleus, plasma membrane, chloroplast, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Alpha-D-phosphohexomutase, C-terminal (InterPro:IPR005843), Alpha-D-phosphohexomutase, conserved site (InterPro:IPR016066), Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III (InterPro:IPR016055), Alpha-D-phosphohexomutase, alpha/beta/alpha domain III (InterPro:IPR005846), Alpha-D-phosphohexomutase, alpha/beta/alpha domain II (InterPro:IPR005845), Alpha-D-phosphohexomutase (InterPro:IPR005841), Alpha-D-phosphohexomutase, alpha/beta/alpha domain I (InterPro:IPR005844); BEST Arabidopsis thaliana protein match is: Phosphoglucomutase/phosphomannomutase family protein (TAIR:AT1G70730.3); Has 7107 Blast hits to 7096 proteins in 2124 species: Archae - 111; Bacteria - 5258; Metazoa - 510; Fungi - 209; Plants - 166; Viruses - 0; Other Eukaryotes - 853 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-08-K09 introduced

  • F01740 - seed::decreased size / seed::decreased length
  • F24835 - rosette leaf::present in greater numbers in organism / whole plant::decreased height / stem::present in greater numbers in organism / stem::abnormal

Mutant lines with disrupted or induced

4 mutant lines found