1. Home
  2. Full-length cDNAs
  3. RAFL06-08-M19

RAFL06-08-M19

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda02906)

full reading [+] show sequence

Nucleotide sequence: RAFL06-08-M19 - full reading 
TGACAGAGAC AACAAACTAA AGTTGGTGGT GATAGAGTGA GAGAGAAACA 
TGGAAGGCAA AGAAGAAGAC GTCAATGTTG GAGCCAACAA GTTCCCAGAG 
AGACAGCCGA TCGGTACGGC GGCTCAGACG GAGAGCAAGG ACTATAAGGA 
ACCACCACCG GCGCCGTTTT TCGAACCCGG CGAGCTCAAA TCTTGGTCTT 
TCTACAGAGC AGGGATAGCT GAGTTCATAG CCACTTTCCT TTTCCTCTAC 
GTCACCGTTT TGACAGTCAT GGGTGTTAAG AGAGCTCCCA ATATGTGTGC 
CTCTGTTGGA ATCCAAGGCA TCGCTTGGGC TTTTGGTGGC ATGATCTTTG 
CTCTTGTTTA CTGTACTGCT GGAATCTCAG GAGGACATAT TAATCCGGCG 
GTGACTTTTG GTTTGTTCTT GGCGAGGAAG CTATCTTTAA CCAGAGCTCT 
GTTCTACATA GTAATGCAGT GCCTTGGAGC TATATGTGGT GCTGGTGTGG 
TTAAAGGGTT TCAACCAGGG CTGTACCAGA CGAATGGCGG TGGAGCTAAT 
GTGGTGGCTC ATGGTTACAC AAAGGGTTCA GGTCTTGGTG CAGAGATTGT 
TGGAACTTTT GTTCTGGTTT ACACTGTTTT CTCAGCTACT GATGCTAAGA 
GAAGTGCCAG AGACTCTCAT GTCCCTATCT TGGCTCCGCT TCCAATTGGG 
TTTGCTGTCT TCTTGGTGCA CTTGGCTACC ATCCCAATTA CTGGAACTGG 
CATTAACCCG GCCAGGAGTC TCGGAGCTGC CATCATCTAC AACAAGGATC 
ATGCTTGGGA TGACCATTGG ATCTTCTGGG TCGGTCCATT CATTGGTGCT 
GCGCTTGCTG CTCTGTACCA TCAGATAGTC ATCAGAGCTA TTCCTTTCAA 
GTCCAAGACA TAAAGTTTCC TACATATTCT CTGATCATCA TCAAGCTAAG 
AATATATCAA TCTTTAATTC TATATGCTTT CTTCTTGTTT CCTATGTCAT 
GTGTGATGAT CTCTATATGT ACCACTAGAG CTTTGATCTT GTAACAGTGT 
AAATGTGTAA TCTATTATGT ATCAATGGCA TTGTATCTTG TAACATTAAT 
TATGTCAATG GAAGAATACA TTGTG

Gene models with high sequence identity

  1. AT4G23400.1 [+] show detail - plasma membrane intrinsic protein 1;5
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
FPrintScan Major intrinsic protein 8e-71
FPrintScan Major intrinsic protein 8e-71
FPrintScan Major intrinsic protein 8e-71
FPrintScan Major intrinsic protein 8e-71
FPrintScan Major intrinsic protein 8e-71
FPrintScan Major intrinsic protein 8e-71
superfamily Major intrinsic protein 6.7e-61
HMMTigr Aquaporin 1.3e-96
HMMPanther AQUAPORIN-RELATED 3e-196
HMMPanther Major intrinsic protein 3e-196
Gene3D Major intrinsic protein 5.6e-64
PatternScan Major intrinsic protein, conserved site 0
HMMPfam Major intrinsic protein 2.8e-85

See the detailed result >

AT4G23400.1

Model type
Protein coding
Short Description
plasma membrane intrinsic protein 1;5
Computational Description
plasma membrane intrinsic protein 1;5 (PIP1;5); FUNCTIONS IN: water channel activity; INVOLVED IN: response to salt stress, transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Major intrinsic protein, conserved site (InterPro:IPR022357), Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: plasma membrane intrinsic protein 1;4 (TAIR:AT4G00430.1); Has 10720 Blast hits to 10702 proteins in 2215 species: Archae - 88; Bacteria - 5150; Metazoa - 1472; Fungi - 448; Plants - 2512; Viruses - 2; Other Eukaryotes - 1048 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-08-M19 introduced

  • F28723 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

15 mutant lines found