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RAFL06-08-N08

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda02909)

full reading [+] show sequence

Nucleotide sequence: RAFL06-08-N08 - full reading 
AACAGAAGAG TTCCTCGACG CCATCAAGAG GAGCAACTAT GGCTGGAGAA 
CTTGTGTCGT TTGGAATAAA AAAGCTTTGG GACCTACTGA GTCAAGAATG 
CGAGCAATTT CAGGGAGTTG AAGATCAAGT TACTGGACTA AAACGTGATC 
TAAACTTGTT AAGCTCTTTT CTAAAAGATG CAGATGCAAA GAAACATACA 
ACTGCGGTGG TGAGAAATGT TGTCGAAGAA ATAAAGGAAA TTGTTTACGA 
CGCAGAAGAT ATAATTGAAA CATATCTTCT TAAAGAAAAA CTTTGGAAAA 
CAAGTGGAAT CAAGATGCGT ATCAGAAGAC ATGCTTGCAT TATTTCAGAT 
CGTAGGAGAA ATGCATTAGA TGTTGGAGGC ATACGTACGA GGATCTCGGA 
TGTGATCCGA GATATGCAGA GTTTTGGAGT GCAACAAGCT ATCGTTGATG 
GTGGTTATAT GCAACCTCAA GGTGATAGAC AAAGGGAGAT GCGACAAACG 
TTTTCTAAGG ACTACGAAAG CGATTTTGTG GGGTTGGAGG TAAATGTTAA 
GAAACTGGTT GGATATTTGG TGGACGAAGA AAACGTTCAA GTGGTTTCCA 
TAACCGGGAT GGGTGGTCTA GGTAAAACCA CACTTGCTAG ACAGGTTTTT 
AACCATGAGG ATGTTAAACA TCAGTTTGAT AGACTCGCAT GGGTGTGTGT 
CTCACAAGAG TTTACTCGGA AGAATGTATG GCAAATGATC TTGCAGAATC 
TAACCTCTAG AGAAAAGAAA GATGAAATCT TGCAAATGGA AGAAGCTGAA 
CTCCATGATA AACTCTTTCA GCTATTGGAG ACATCTAAAT CATTAATTGT 
CTTTGATGAC ATATGGAAAG ACGAAGATTG GGACCTAATA AAGCCAATAT 
TTCCACCCAA TAAAGGTTGG AAGGTGCTTC TTACTTCTCA AAATGAGAGT 
GTCGCGGTAC GTGGGGATAT AAAATATCTC AACTTTAAAC CAGAATGCCT 
AGCCATTGAG GATAGTTGGA CACTTTTCCA AAGAATAGCA TTTCCAAAGA 
AAGATGCATC TGAATCTAAG GTTGACGAGG AAATGGAAGA TATGGGTAAG 
CAAATGTTAA AACATTGTGG AGGGCTACCA TTAGCCATCA AAGTGTTAGG 
AGGTTTGTTA GCTGCAAAGT ACACAATGCA TGATTGGGAA AGACTATCCG 
TAAATATCGG ATCTGATATC GTGGGAAGAA CCAGCAGTAA CAACAGTTCA 
ATATACCATG TATTGTCTAT GAGCTTTGAG GAGTTGCCTA GTTATTTGAA 
ACATTGTTTC CTCTACCTGG CCCATTTTCC AGAAGATCAT AAGATTAACG 
TGGAGAAATT GTCTTATTGT TGGGCTGCAG AAGGAATATC CACCGCCGAA 
GATTATCACA ATGGAGAGAC CATTCAAGAT GTTGGACAGA GCTACCTAGA 
GGAGTTAGTG AGGAGGAATA TGATAATTTG GGAAAGAGAT GCTACTGCTT 
CGAGATTTGG AACTTGTCAT TTGCATGACA TGATGAGAGA AGTTTGTTTG 
TTTAAAGCCA AGGAAGAAAA CTTCCTACAA ATTGCTGTAA AAAGTGTAGG 
TGTAACCAGC TCCTCGACCG GAAACTCTCA ATCTCCTTGT AGATCTCGCA 
GGCTTGTCTA CCAATGTCCA ACTACATTAC ATGTTGAGAG AGATATAAAC 
AATCCAAAAC TTAGATCTCT CGTGGTTCTC TGGCATGATT TATGGGTAGA 
AAATTGGAAG CTATTAGGTA CAAGCTTTAC AAGGTTAAAA CTTCTGA

Gene models with high sequence identity

  1. AT1G58390.1 [+] show detail - Disease resistance protein (CC-NBS-LRR class) family
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily P-loop containing nucleoside triphosphate hyd 1.5e-14
HMMPfam NB-ARC 5e-82
FPrintScan Disease resistance protein 2e-16
FPrintScan Disease resistance protein 2e-16
FPrintScan Disease resistance protein 2e-16

See the detailed result >

AT1G58390.1

Model type
Protein coding
Short Description
Disease resistance protein (CC-NBS-LRR class) family
Computational Description
Disease resistance protein (CC-NBS-LRR class) family; FUNCTIONS IN: ATP binding; INVOLVED IN: defense response, apoptosis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, LP.08 eight leaves visible, D bilateral stage; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT1G58400.1); Has 14341 Blast hits to 13745 proteins in 491 species: Archae - 4; Bacteria - 531; Metazoa - 280; Fungi - 132; Plants - 13314; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-08-N08 introduced

  • F03550 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found