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  3. RAFL06-08-N17

RAFL06-08-N17

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda17162)

full reading [+] show sequence

Nucleotide sequence: RAFL06-08-N17 - full reading
GATTCCACCA GTCTCTCGCA ATCTTCGCTC TTCTCTTTGC TCTCTCTCTC 
TCAACGCGGT TCAGATCCGA GTTTGGGAGA TTCAAGCTCC CTGAAAAAAG
CCCTTTACTC TCGCTTACCA ACTTTGCTCC AGCATGGCAG GATCTGCACC
AGAAGGCACA CAGTTTGATG CACGTCAGTT TGACCAGAAA CTCAATGAAG
TACTTGAGGG ACAAGATGAG TTCTTCACAT CCTATGATGA TGTTCATGAG
AGCTTTGATG CCATGGGTCT TCAAGAGAAC CTTCTCAGGG GTATTTATGC
TTATGGTTTT GAGAAGCCTT CTGCTATTCA GCAAAGAGGA ATCGTCCCCT
TCTGTAAGGG TCTTGATGTG ATTCAACAGG CTCAGTCTGG TACTGGGAAA
ACAACAACTT TCTGCTCTGG TGTCTTGCAG CAGCTGGACT TCTCCCTTAT
CCAGTGTCAG GCTTTGGTTC TAGCTCCAAC TAGAGAGCTT GCTCAGCAAA
TTGAGAAGGT CATGAGGGCC CTTGGTGATT ACCTTGGTGT CAAGGTTCAC
GCCTGTGTTG GTGGAACCAG TGTCCGTGAG GATCAGCGCA TCCTCCAAGC
TAGTGTCCAT GTTGTTGTTG GAACTCCAGG GCGTGTCTTT GACATGTTGA
AGAGGCAGTC TCTTCGTGCT GACAACATCA AGATGTTTGT TCTCGATGAA
GCTGATGAAA TGCTCTCCCG TGGTTTCAAG GACCAGATCT ATGACATATT
CCAGCTTCTT CCACCAAAGA TCCAAGTTGG TGTGTTCTCC GCAACAATGC
CACCAGAAGC TCTTGAGATC ACAAGGAAGT TCATGAGCAA GCCAGTGAGA
ATCTTGGTGA AGCGTGATGA GCTTACCCTT GAAGGTATCA AGCAGTTCTA
CGTCAACGTT GAGAAAGAAG AGTGGAAGCT CGAGACACTC TGTGATCTCT
ACGAGACTCT TGCCATCACT CAGAGTGTCA TCTTCGTGAA CACCAGGCGT
AAGGTTGATT GGCTCACAGA CAAAATGAGA AGCCGTGACC ACACAGTCTC
TGCAACTCAC GGAGACATGG ACCAGAACAC CAGGGACATC ATCATGAGAG
AGTTCAGGTC TGGTTCCTCC CGTGTTCTCA TCACCACTGA CCTCTTAGCT
CGTGGTATTG ATGTCCAACA AGTCTCCCTG GTTATCAACT TCGATCTCCC
AACTCAGCCA GAGAACTACC TTCACCGTAT CGGAAGAAGT GGAAGGTTCG
GGAGAAAGGG TGTTGCGATC AATTTCGTGA CCCGTGATGA TGAGAGGATG
CTGTTTGATA TTCAGAAATT CTACAATGTG GTTGTCGAAG AGCTGCCTTC
GAACGTGGCC GATCTGCTGT GAAGGGAGAA AAGAAGTCGG TTCTGTTGCT
GTGTTTGCTC TGCCGTACTA GTATCACCGG AGAAGAAAGG TTTTCTTGTT
TTGCAAGGCA CTCTTTGATC TGATTTTGAC CCGTCGTCTA TCAGCGATTT
ACATTTCTTA AATTTTCTTA GTTGTTGTTC TCTCCTCTCT CTCCCAGCTA
CGAACATATC TCTCTCTTCT TGACCATTTT TAAGTTTAAG TCATATGGAG
TATTTATTTC TTCAAAAAAA AGA

Gene models with high sequence identity

  1. AT3G13920.1 [+] show detail - eukaryotic translation initiation factor 4A1
    E-value: 0; Score: 99.88

 

InterPro Scan Digest

Program Description E-value
HMMPfam DNA/RNA helicase, DEAD/DEAH box type, N-terminal 1.1e-43
HMMPfam DNA/RNA helicase, C-terminal 1.4e-25
ProfileScan Helicase, superfamily 1/2, ATP-binding domain 29.566
ProfileScan DNA/RNA helicase, C-terminal 25.831
ProfileScan RNA helicase, DEAD-box type, Q motif 10.433
Gene3D no description 7.6e-68
Gene3D no description 5.6e-51
PatternScan RNA helicase, ATP-dependent, DEAD-box, conserved site 0
HMMSmart DEAD-like helicase, N-terminal 3.7e-56
HMMSmart DNA/RNA helicase, C-terminal 2.9e-31
superfamily P-loop containing nucleoside triphosphate hyd 1.3e-56
superfamily P-loop containing nucleoside triphosphate hyd 8e-48
HMMPanther EUKARYOTIC INITIATION FACTOR 4A 1.1e-300
HMMPanther DEAD BOX ATP-DEPENDENT RNA HELICASE 1.1e-300

See the detailed result >

AT3G13920.1

Model type
Protein coding
Short Description
eukaryotic translation initiation factor 4A1
Curator Summary
eukaryotic translation initiation factor 4A-1
Computational Description
eukaryotic translation initiation factor 4A1 (EIF4A1); FUNCTIONS IN: protein binding, ATP-dependent helicase activity, translation initiation factor activity; INVOLVED IN: response to cadmium ion, translational initiation; LOCATED IN: cytosol, nucleolus, cell wall, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: eif4a-2 (TAIR:AT1G54270.1); Has 49714 Blast hits to 49117 proteins in 3142 species: Archae - 779; Bacteria - 27442; Metazoa - 6117; Fungi - 4773; Plants - 2624; Viruses - 17; Other Eukaryotes - 7962 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-08-N17 introduced

  • F11221 - seed::decreased size
  • F23643 - rosette leaf::dark green / rosette leaf::abnormal / stem::present in fewer numbers in organism
  • F25332 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

6 mutant lines found