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RAFL06-09-A05

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda07512)

full reading [+] show sequence

Nucleotide sequence: RAFL06-09-A05 - full reading 
ATAATCAAAA CCACAAAGAA GACTCCAACA TAATTCATCA TCTATGGCTT 
CTTCACATCA ACAACAGCAA GAACAAGACC AGTCAGCTTT AGATCTCATA 
ACCCAACACC TTCTTACTGA TTTCCCTTCC TTAGACACCT TTGCCTCCAC 
CATCCACCAC TGCACCACCT CAACTCTAAG CCAACGCAAA CCACCTCTTG 
CCACTATAGC AGTTCCTACT ACTGCACCGG TGGTTCAAGA GAATGATCAA 
AGGCATTACA GAGGCGTCAG GAGAAGACCA TGGGGTAAGT ATGCGGCTGA 
GATCAGAGAC CCAAACAAGA AAGGTGTTCG TGTCTGGTTA GGCACTTTTG 
ACACAGCCAT GGAAGCTGCA AGAGGTTATG ACAAGGCAGC TTTTAAACTA 
CGAGGAAGCA AAGCTATTCT TAACTTCCCA CTTGAAGCAG GAAAGCATGA 
GGACTTGGGA GACAACAAGA AGACTATTTC TTTAAAAGCA AAGAGGAAGA 
GACAGGTGAC GGAGGATGAA AGCCAGCTGA TCAGCCGTAA AGCTGTTAAG 
AGGGAAGAAG CTCAGGTTCA GGCTGATGCT TGTCCATTAA CGCCATCAAG 
TTGGAAGGGG TTTTGGGACG GAGCAGACAG TAAAGACATG GGAATATTTT 
CCGTGCCTCT GTTATCTCCT TGTCCATCTC TTGGACACTC TCAACTCGTA 
GTTACTTAAG CTTCAGAGGG TCAAACTGGA AAAAATCAAC ATTGGATTGT 
TTTCAAAGCT TCTAGATTAG CTGATTGTAA AAAAATGTTT TACTATATTC 
ATTCATTCTT CTT

Gene models with high sequence identity

  1. AT5G51190.1 [+] show detail - Integrase-type DNA-binding superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
ProfileScan Pathogenesis-related transcriptional factor/ERF, DNA-binding 24.342
superfamily DNA-binding, integrase-type 4.6e-24
FPrintScan Pathogenesis-related transcriptional factor/ERF, DNA-binding 0.0000000004
FPrintScan Pathogenesis-related transcriptional factor/ERF, DNA-binding 0.0000000004
Gene3D Pathogenesis-related transcriptional factor/ERF, DNA-binding 2.5e-24
HMMSmart Pathogenesis-related transcriptional factor/ERF, DNA-binding 8.9e-37
HMMPfam Pathogenesis-related transcriptional factor/ERF, DNA-binding 6e-16

See the detailed result >

AT5G51190.1

Model type
Protein coding
Short Description
Integrase-type DNA-binding superfamily protein
Curator Summary
encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.
Computational Description
Integrase-type DNA-binding superfamily protein; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: ethylene response factor 104 (TAIR:AT5G61600.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-09-A05 introduced

  • F01338 - seed::decreased size
  • F10324 - Specific phenotypes were NOT observed.
  • F23724 - Specific phenotypes were NOT observed.
  • F24247 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found