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RAFL06-09-F12

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda02933)

full reading [+] show sequence

Nucleotide sequence: RAFL06-09-F12 - full reading 
TGATGGCCGC ACCTGCAAAC TTCTCGTCTC AATGTTCCGA TTATACCCTA 
ATTGCTCTCT GCCTTCTCAC AGACCTCTCG TTTTCCTTCC TCGTCTTCCT 
TCTCGCTCCC TCCGTTGCCG CGCCGCCGCT GATATTCCCC TTGGTGACGG 
AATCCGATTA CCTCGAGAAG CGGATTCAAC CTCTGACACG GCGAGGTCTC 
GGGATGTTTC CGTCGCCGCC GGTGGGAATG GTGAAGGTGC TAAGTGGAGG 
AAGAGGAGGT TGCTCTGGTC GAAAAGTGGA GAGAGTTACT TGGTAGATGA 
TGGCGACGCG CTTCCTCTTC CTATGACTTA TCCTGATACA TCCCCTGTGT 
CGCCGGATGT GATTGACCGG AGGTTGCAAT GTGATCCTGT AGTCGAGGAT 
TGCCGGGAAG TGGTTTATGA ATGGACTGGA AAGTGTAGAA GTTGCCAAGG 
ATCTGGAACT GTCAGCTATT ACAAGAAAAG GGGTAAAGAG GTTATATGCA 
AATGCATACC CTGCCAAGGG ATAGGATATG TGCAGAAGAT AACATCTCGG 
ACGGACATTG AAGTGATGGA AGATTTGGAT AATGAACCAT CTTGACCTTG 
AATATGGCCC ATTTTTGCAT GTAAGCTTGG GTTCGTTATT GAAGTGTATC 
CGTTGCACGT ACAAAACTAT AACCAGAAGA GAGATAAGTG CTTCTTTGGG 
ATGTTTGGCC CAAACAAGCT GATCGGAGGT ATAGACAAAA ACTACTGATT 
CTTGCTCAGA TAATGGCTTC TTCTTTCACC AATAGTCCCC ATATAGGCAA 
TTTCTGTTTT ATATGTATCA GACCTCGAGA CACCACGAAC TGCAGGAATT 
GTTTGTGTTT TTAGGCTGTT TCAGTCTGAC TTATGTACAT CAAGAGAAAA 
GATAGCTGTA ACACGATCCA TTTAATTATC TTTGTGTGCT TTACCTCTTG 
GTTCAAGTT

Gene models with high sequence identity

  1. AT3G19220.1 [+] show detail - protein disulfide isomerases
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

See the detailed result >

AT3G19220.1

Model type
Protein coding
Short Description
protein disulfide isomerases
Curator Summary
Encodes a zinc finger protein that is similar to a subgroup of DnaJ and is involved in cotyledon chloroplast biogenesis. Cyo1 is localized to the thylakoid membrane and has protein disulfide isomerase activity in vivo.Cyo1 is more highly expressed in light grown seedlings. Loss of function mutants have albino cotyledons and abnormal plastids.
Computational Description
SNOWY COTYLEDON 2 (SCO2); Has 34 Blast hits to 34 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-09-F12 introduced

  • F09913 - Specific phenotypes were NOT observed.
  • F09921 - seed::increased size / seed::increased length
  • F14125 - seed::increased size / seed::increased length / seed::decreased width
  • F30101 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

6 mutant lines found