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  3. RAFL06-09-F15

RAFL06-09-F15

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda02935)

full reading [+] show sequence

Nucleotide sequence: RAFL06-09-F15 - full reading 
ACGAGAGAGA GAGAAAGTAT CTAAAATTAA GCTTTGTGTT TGAAATCGAA 
ATCGAATCGA GAAGAAGAGA ATCTCAATGG AAGCTGATGA CGATTTCTAC 
AGCGGCACCG AAAACTACTC CGATTACGCC GACTCCGACG AAGATGACGC 
CGACGGCGAG TACGAGTTCG TTGACGACGC TGCTGATGAT TCCGATGACC 
TTATCTTCCG TCGCCGCCAG CAAAATTATA GTGTGTTAAG CGAAGCAGAT 
ATTTGTAAGC TTCAAGAAGA TGATATTTCA AGGATTTCTA CTGTTTTGTC 
CATTTCGAGG AATTCATCTG CGATCCTGCT TCGTCACTAC AATTGGTGTG 
TGAGCAGAGT TCATGATGAA TGGTTTGCTG ATGAGGAAAA GGTTCGAGAT 
GCTGTTGGTT TATTAGAGAA ACCTGTTGTT GATTTCCCAA CTGATGGAGA 
ACTTGATTGT GGAATTTGTT TTGAGACTTT CCTTTCTGAC AAATTGCATG 
CTGCTGCTTG TGGTCATCCA TTCTGCGACT CATGTTGGGA AGGTTATATC 
ACCACAGCGA TTAATGATGG TCCAGGGTGT CTTACATTAC GATGTCCAGA 
TCCTTCTTGC AGAGCTGCTG TTGGTCAGGA TATGATCAAT TTGCTAGCTC 
CTGATAAAGA TAAGCAAAAG TACACTAGTT ATTTTGTCAG ATCATACGTT 
GAAGACAATA GAAAGACCAA GTGGTGTCCC GCTCCTGGCT GTGACTATGC 
TGTAAATTTT GTTGTTGGAA GTGGTAATTA TGATGTGAAT TGTCGCTGCT 
GTTACAGTTT CTGCTGGAAT TGTGCTGAAG AAGCTCACCG TCCTGTAGAT 
TGTGACACTG TTTCTAAGTG GGTATTGAAG AATAGTGCTG AGTCGGAGAA 
TATGAATTGG ATTTTGGCAA ATTCCAAGCC CTGTCCAAAA TGCAAACGGC 
CAATAGAGAA AAACCAGGGT TGTATGCATA TTACGTGCAC CCCACCATGT 
AAATTTGAGT TCTGCTGGCT TTGCCTTGGG GCGTGGACAG AGCATGGTGA 
GAAGACAGGT GGCTTTTATG CTTGTAACCG TTATGAAGCA GCAAAGCAAG 
ATGGCATTTA TGATGAGACT GAAAAACGCC GAGAGATGGC AAAGAACTCT 
CTTGAGAGAT ATACCCACTA CTATGAGAGA TGGGCAACCA ATCAATCGTC 
TAGGCAAAAG GCGCTGCTGG ATCTTAAGAA GATGCAAACA GATGATATTG 
AGAAGCTCAG TGACATACAG TGTCAGCCTG AATCACAACT GAAGTTCATT 
ATAGAAGCAT GGTTACAGAT AGTTGAATGC AGACGAGTTC TAAAATGGAC 
ATATGCCTAT GGTTTTTACA TACCTGACCA GGAGCATGGA AAAAGAGTGT 
TTTTTGAGTA CTTGCAAGGC GAAGCTGAGT CGGGCCTTGA ACGACTTCAT 
CAATGTGCTG AAAAAGAGCT GCTACCATAC TTAGATGCCA AAGGTCCAAG 
TGAAGATTTT AATGAATTCC GCACAAAACT GGCAGGTTTA ACAAGTGTTA 
CCAAAAACTA TTTTGAGAAC TTGGTTAGAG CGCTGGAGAA TGGGCTATCG 
GATGTGAACT CGCATGATGC ATATGATCGA ACTTCAAGTT CAAAGAGCTT 
AGGGGGGAAG ACTAAGGGAT CGAGTTCTAA AGCCAGCAGC TCCGATTCAA 
GCCATTGGCC TTGTGAATAT TGCACTTACG TAAATCCAAG GTCGACCACC 
ATTTGCCAAA TGTGTGAACA TGGCCGGTGA AATGCCAGAA ACTGGCATTA 
AAGACTGTAA TAGTAATGCT TCGTCGCTTT TGGTCATAAT TATGATCAAG 
TGTCGTGTAA CTTTGTATGT TTCTCGTATT AGAATAAACG GGTCCAATAA 
ATTGGATTAG ATTGGCCATT ATTATTGATT TGCCAATGAC CAAAAAGTGA 
AAACATGAGA GGTGAGTTAT ATATAAGTTC TTACAAAATA ATTGTAAAAC 
TTCTGTAAGT TTT

Gene models with high sequence identity

  1. AT1G65430.1 [+] show detail - IBR domain-containing protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther ARI-LIKE RING ZINC FINGER PROTEIN-RELATED 1.1e-301
HMMPanther ARIADNE RING ZINC FINGER 1.1e-301
ProfileScan Zinc finger, RING-type 9.465
ProfileScan Zinc finger, RanBP2-type 8.05
HMMPfam Zinc finger, C6HC-type 1.7e-13
HMMPfam Zinc finger, C6HC-type 3.8e-10
PatternScan Zinc finger, RanBP2-type 0
HMMSmart Zinc finger, C6HC-type 1.5e-22
HMMSmart Zinc finger, C6HC-type 0.09
HMMSmart Zinc finger, RanBP2-type 8.9e-06
superfamily RING/U-box 2.6e-16
superfamily RING/U-box 4e-10
superfamily NZF domain 8.8e-06

See the detailed result >

AT1G65430.1

Model type
Protein coding
Short Description
IBR domain-containing protein
Computational Description
ARIADNE 8 (ARI8); FUNCTIONS IN: ubiquitin-protein ligase activity; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, CCHC-type (InterPro:IPR001878), Zinc finger, RanBP2-type (InterPro:IPR001876); BEST Arabidopsis thaliana protein match is: IBR domain-containing protein (TAIR:AT2G31510.1); Has 2973 Blast hits to 2950 proteins in 222 species: Archae - 0; Bacteria - 0; Metazoa - 1311; Fungi - 559; Plants - 644; Viruses - 3; Other Eukaryotes - 456 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-09-F15 introduced

  • F15107 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

2 mutant lines found