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RAFL06-09-F16

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda02936)

full reading [+] show sequence

Nucleotide sequence: RAFL06-09-F16 - full reading 
ACAAACCGCA AACGCGACAG AACTAACTAA CGACGCCGGA GATGGCCGCC 
ACTTCAACCG CCGCTGCTGC TTCTTCAATC ATGGGTACCC GGGTGGTTTC 
CGACATTAGC TCCAATTCAA GCCGGTTCAC AGCCCGGTTC GGATTCGGAA 
CCAAGAAAGC ATCTCCCAAA AAGGCTAAGA CGGTTATCTC AGACCGGCCT 
CTATGGTTCC CAGGCGCAAA ATCACCCGAA TATCTCGACG GTTCACTTGT 
CGGGGACTAC GGGTTCGATC CTTTTGGTTT AGGCAAACCG GCGGAGTATC 
TCCAATTCGA TTTGGATTCC TTGGACCAGA ACTTAGCCAA GAACTTATAC 
GGAGAAGTGA TCGGGACTCG TACCGAGGCG GTGGACCCCA AATCGACGCC 
GTTTCAGCCA TATAGTGAAG TCTTCGGGCT ACAAAGATTC AGAGAATGTG 
AGCTGATTCA CGGTCGGTGG GCAATGCTCG CCACTCTTGG CGCTATCACC 
GTCGAATGGC TCACCGGTGT TACTTGGCAA GACGCCGGCA AGGTAGAGCT 
AGTGGATGGA TCATCTTACT TAGGACAGCC ATTGCCGTTC TCTATCTCGA 
CATTGATATG GATCGAAGTG TTAGTGATCG GCTACATTGA GTTCCAACGA 
AACGCTGAAC TGGACTCGGA GAAGCGTTTG TATCCAGGAG GCAAGTTCTT 
TGACCCGTTA GGACTAGCGT CTGACCCGGT GAAGAAGGCT CAGCTTCAGC 
TAGCTGAGAT CAAACATGCT CGTTTAGCCA TGGTTGGATT CTTGGGTTTT 
GCGGTTCAGG CGGCTGCAAC CGGTAAAGGA CCGCTCAACA ACTGGGCGAC 
TCACCTTAGT GACCCACTTC ACACCACCAT TATCGATACC TTCTCTTCCT 
CCTGATGTGG TGGCTTTTAG CTTCTACTGG TGTCATGTAA TGATGTGGTG 
GCTTTTAGCT TCTACTGGTG TCATGTAATG ATGTAACGTC GTTATTTTAA 
AGAAAATTTG GCACCTTTTG TAT

Gene models with high sequence identity

  1. AT3G08940.2 [+] show detail - light harvesting complex photosystem II
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther Chlorophyll A-B binding protein 3.3e-113
HMMPfam Chloroa_b-bind 1.2e-48
superfamily Chlorophyll a-b binding protein 9.7e-60

See the detailed result >

AT3G08940.2

Model type
Protein coding
Short Description
light harvesting complex photosystem II
Curator Summary
Lhcb4.2 protein (Lhcb4.2, protein involved in the light harvesting complex of photosystem II
Computational Description
light harvesting complex photosystem II (LHCB4.2); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: response to blue light, response to red light, response to far red light; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: light harvesting complex photosystem II (TAIR:AT5G01530.1); Has 2312 Blast hits to 2241 proteins in 218 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 1976; Viruses - 0; Other Eukaryotes - 332 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-09-F16 introduced

  • F04017 - Specific phenotypes were NOT observed.
  • F08130 - Specific phenotypes were NOT observed.
  • F12328 - seed::increased size / seed::increased length
  • F20229 - seed::increased size / seed::increased length
  • F22412 - seed::increased size / seed::increased length
  • F22521 - seed::increased length
  • F25041 - Specific phenotypes were NOT observed.
  • F25417 - Specific phenotypes were NOT observed.
  • F26050 - Specific phenotypes were NOT observed.
  • F26421 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

11 mutant lines found