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RAFL06-09-F19

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda09370)

full reading [+] show sequence

Nucleotide sequence: RAFL06-09-F19 - full reading 
AGCTACACAC GAGAAAGAAA AAGCTCACAA CTTTAACCTT TCTGGAGAGA 
GAAGAACAAA AGAGGGAGAG GGAGAGAAAT GGAAGGCAAA GAAGAAGATG 
TACGAGTGGG AGCTAACAAG TTCCCGGAGA GGCAACCCAT CGGTACATCG 
GCTCAGTCCA CCGACAAGGA CTACAAAGAG CCACCTCCTG CGCCACTGTT 
CGAGCCCGGC GAGCTCAGCT CATGGTCTTT CTACAGAGCC GGAATAGCTG 
AGTTTATCGC TACTTTCTTG TTTCTCTACA TCACTGTTTT GACTGTAATG 
GGAGTTAAGA GAGCACCAAA CATGTGTGCT TCTGTTGGAA TCCAAGGTAT 
CGCTTGGGCT TTTGGTGGCA TGATCTTTGC TCTTGTCTAC TGTACTGCTG 
GAATTTCAGG TGGACACATC AACCCTGCTG TAACATTCGG TCTGTTCTTG 
GCTCGGAAGT TATCTCTGAC CAGAGCAGTG TTCTACATGA TTATGCAATG 
TCTTGGAGCC ATCTGTGGTG CCGGAGTCGT CAAAGGTTTC CAGCCAACGC 
CGTACCAGAC TCTCGGTGGT GGTGCTAACA CCGTTGCTCA TGGCTACACC 
AAAGGTTCTG GCCTTGGTGC TGAAATCATC GGAACATTCG TTCTCGTCTA 
CACTGTCTTC TCCGCCACCG ACGCCAAGAG AAGCGCCCGT GACTCACACG 
TCCCGATTTT GGCGCCGCTC CCAATCGGAT TTGCAGTGTT CTTGGTACAC 
TTGGCAACAA TACCGATCAC CGGGACCGGA ATCAACCCAG CTAGAAGTCT 
TGGAGCCGCA ATTATCTACA ACAAGGACCA CTCTTGGGAT GACCATTGGA 
TTTTCTGGGT TGGACCATTC ATTGGAGCAG CTCTAGCAGC ACTATATCAC 
CAGATTGTCA TCAGAGCGAT TCCTTTCAAG AGCAAGAGTT AGAGACACAC 
AGAAAGATTC CACGGTCCAG AATTTGTTCT TTAGTAGTTT CTTTGCTTAT 
CTATCTAATG TAGCTTGTGT TTTGCAATGT AATGAGCCTT TCAAGAATAT 
GTATTTGGGA TTTCTAATCA GCTTTTGTCT ATG

Gene models with high sequence identity

  1. AT4G00430.1 [+] show detail - plasma membrane intrinsic protein 1;4
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam Major intrinsic protein 1.9e-85
FPrintScan Major intrinsic protein 7.7e-71
FPrintScan Major intrinsic protein 7.7e-71
FPrintScan Major intrinsic protein 7.7e-71
FPrintScan Major intrinsic protein 7.7e-71
FPrintScan Major intrinsic protein 7.7e-71
FPrintScan Major intrinsic protein 7.7e-71
superfamily Major intrinsic protein 1.2e-60
PatternScan Major intrinsic protein, conserved site 0
Gene3D Major intrinsic protein 6.8e-64
HMMPanther AQUAPORIN-RELATED 4e-197
HMMPanther Major intrinsic protein 4e-197
HMMTigr Aquaporin 3.2e-98

See the detailed result >

AT4G00430.1

Model type
Protein coding
Short Description
plasma membrane intrinsic protein 1;4
Curator Summary
a member of the plasma membrane intrinsic protein subfamily PIP1.
Computational Description
plasma membrane intrinsic protein 1;4 (PIP1;4); FUNCTIONS IN: water channel activity; INVOLVED IN: response to water deprivation, transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Major intrinsic protein, conserved site (InterPro:IPR022357), Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: plasma membrane intrinsic protein 1B (TAIR:AT2G45960.1); Has 10702 Blast hits to 10683 proteins in 2216 species: Archae - 88; Bacteria - 5147; Metazoa - 1472; Fungi - 442; Plants - 2512; Viruses - 2; Other Eukaryotes - 1039 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-09-F19 introduced

  • F03018 - seed::decreased size
  • F24831 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

36 mutant lines found