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  3. RAFL06-09-F24

RAFL06-09-F24

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda02937)

full reading [+] show sequence

Nucleotide sequence: RAFL06-09-F24 - full reading 
ACCAACCTGA TCATCATCAA AACCATTTCA TCCGTAGTGG TCAATGGCGG 
CTTCTCCGTT GGTGGTTCAG AAAACAGAGG AGGAGTGGCG TGCGGTTCTT 
TCTCCGGAGC AGTTTCGTAT TCTTCGTCAA AAAGGCACTG AAAAGCCAGG 
AACTGGAGAA TATGACAAGT TTTTCGAGGA AGGAATCTTC GATTGCGTAG 
GATGCAAGAC TCCTCTTTAT AAATCAACCA CGAAGTTCGA TTCCGGATGT 
GGCTGGCCAG CTTTCTTTGA AGGACTCCCT GGTGCCATAA ACCGAACCCC 
TGATCCAGAT GGGAGAAGAA CTGAGATCAC TTGTGCTGCG TGCGATGGAC 
ATTTAGGCCA TGTTTTCAAA GGAGAAGGTT ACGGTAATCC AACCGATGAA 
CGTCATTGCG TTAACAGTGT TTCGATCAGT TTTAACCCGG CAAAATCTTC 
CTCTATAATC TGAGGATATG ATTGATCGAT CATACAACAT CTTCTAATCA 
GATTGTGTTG TTAAAATTGT CATCATGTAG TGAATATGCA CTTTCTGTGG 
TGGTCAATAT AATGCAACAA ATAATAAGAC TCATTAGATA TTGGATGGTT 
ACTGGTTTCT CTTAATATGT TATAGAACAT TTAATAACGA TTTAATTATC 
TAAGGGATCA TTACTAGTGT TTCCT

Gene models with high sequence identity

  1. AT4G04830.1 [+] show detail - methionine sulfoxide reductase B5
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily Mss4-like 1.2e-48
HMMTigr Methionine sulphoxide reductase B 6.3e-44
HMMPfam Methionine sulphoxide reductase B 6.8e-54
HMMPanther METHIONINE SULFOXIDE REDUCTASE 1.6e-57

See the detailed result >

AT4G04830.1

Model type
Protein coding
Short Description
methionine sulfoxide reductase B5
Computational Description
methionine sulfoxide reductase B5 (MSRB5); FUNCTIONS IN: peptide-methionine-(S)-S-oxide reductase activity; INVOLVED IN: oxidation reduction; LOCATED IN: cytosol; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Methionine sulphoxide reductase B (InterPro:IPR002579), Mss4-like (InterPro:IPR011057); BEST Arabidopsis thaliana protein match is: methionine sulfoxide reductase B4 (TAIR:AT4G04810.1); Has 8417 Blast hits to 8406 proteins in 2250 species: Archae - 78; Bacteria - 4939; Metazoa - 269; Fungi - 135; Plants - 208; Viruses - 1; Other Eukaryotes - 2787 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-09-F24 introduced

  • F15433 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

3 mutant lines found