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RAFL06-09-H15

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda02943)

full reading [+] show sequence

Nucleotide sequence: RAFL06-09-H15 - full reading 
CCATCAAAAT CCTCCGACGA TGACAACCAT AGCTGCAGCT GGCCTCAACG 
TCGCGACTCC ACGAGTGGTC GTTCGACCTG TGGCTCGTGT ATTAGGTCCG 
GTCCGGTTGA ATTACCCGTG GAAATTCGGT TCGATGAAGC GGATGGTTGT 
GGTTAAGGCT ACATCGGAAG GAGAGATATC GGAGAAGGTG GAGAAGAGTA 
TACAAGAAGC TAAGGAGACA TGCGCTGATG ATCCGGTGAG CGGGGAGTGT 
GTAGCGGCTT GGGACGAGGT GGAGGAGCTG AGTGCGGCGG CGAGTCATGC 
TAGGGACAAG AAGAAAGCTG GTGGCTCCGA TCCTTTGGAA GAGTATTGCA 
ATGATAATCC TGAGACTGAT GAGTGTCGTA CTTATGATAA TTAAAAAATA 
TGTTTTTGAT GTTCGAATTA TGAAACTTTA GGTATGGATC AATGTTTGTT 
CTTCTTGTCC CTTGTTGTTA TGTTTGTGTT TTTGGTTTGG TTGATGATTG 
TAATGTGATA AATGAATATG AATAGTACAA TACACAACAT ATGTTTCAT

Gene models with high sequence identity

  1. AT2G47400.1 [+] show detail - CP12 domain-containing protein 1
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

See the detailed result >

AT2G47400.1

Model type
Protein coding
Short Description
CP12 domain-containing protein 1
Curator Summary
CP12-1 encodes a small peptide found in the chloroplast stroma. It belongs to the CP12 gene family thought to be involved in the formation of a supramolecular complex with glyceraldehyde-3-phosphate dehydrogenase (GAPDH) and phosphoribulokinase (PRK) embedded in the Calvin cycle.
Computational Description
CP12 domain-containing protein 1 (CP12-1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: negative regulation of reductive pentose-phosphate cycle; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function CP12 (InterPro:IPR003823); BEST Arabidopsis thaliana protein match is: CP12 domain-containing protein 2 (TAIR:AT3G62410.1); Has 264 Blast hits to 264 proteins in 70 species: Archae - 0; Bacteria - 128; Metazoa - 0; Fungi - 0; Plants - 120; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-09-H15 introduced

  • F11748 - Specific phenotypes were NOT observed.
  • F17622 - Specific phenotypes were NOT observed.
  • F24611 - Specific phenotypes were NOT observed.
  • F27926 - Specific phenotypes were NOT observed.
  • F30120 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

11 mutant lines found