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  3. RAFL06-09-L23

RAFL06-09-L23

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda02955)

full reading [+] show sequence

Nucleotide sequence: RAFL06-09-L23 - full reading 
AACTTTCGTT TCCACTTCAG ACCGATCTCA TAATTTGATC GCAAAACTGA 
TCAAATAGCG TAAAATTGAA ATTCAAATTT TCGCCGGAGC TCCGTCGGAT 
AAAACAATAA GCGACGTGCG GCGATGGAAT CTCACGGTTC CGGTCTCCGG 
CGAGTTCTGT TATTGTCGTT CTGTGTCGCT GGGATCTGGG CAGCTTACAT 
ATACCAAGGC ATTCTTCAAG AGACCTTGTC GACGAAGAAA TTTGGTGAAG 
ATGGGAAGAG ATTCGAGCAT CTTGCATTTC TGAATTTGGC TCAGAATGTA 
ATCTGCTTGG TTTGGTCTTA TATAATGATT AAGCTCTGGT CCAACGGAGG 
TTCTGGTGGA GCCCCATGGT GGACGTATTG GAGTGCTGGC ATTACTAATA 
CCATTGGTCC TGCTATGGGC ATTGAAGCTT TAAAGTATAT TAGTTACCCA 
GCTCAGGTCC TTGCAAAATC TTCCAAAATG ATTCCAGTTA TGCTGATGGG 
CTCCTTAGTT TATGGCATAA GATACACTTT GCCTGAGTAT CTTTGCACCT 
TTCTTGTTGC CGGAGGAGTA TCTATGTTTG CCCTTCTTAA GACAAGCTCT 
AAAACCATCA GCAAGCTAGC ACATCCCAAT GCACCCCTTG GTTACGGGCT 
TTGCTTCTTA AACCTTGCCT TTGATGGATT CACAAACGCA ACCCAGGATT 
CCATTACCGC AAGGTACCCC AAAACTAACG CATGGGACAT AATGCTGGGA 
ATGAATTTAT GGGGAACCAT ATACAACATG GTCTACATGT TTGGATTGCC 
ACATGGGAGC GGATTTGAAG CTGTGCAGTT CTGCAAGCAA CACCCTGAGG 
CAGCATGGGA CATTCTTATG TACTGTTTAT GCGGTGCAGT AGGCCAAAAC 
TTCATCTTCT TGACAATAAG CAGATTCGGG TCTCTAGCTA ACACGACCAT 
AACCACAACC AGGAAGTTTG TAAGCATCGT GGTATCTTCA GTTTTGAGCG 
GGAATCCGTT ATCTTCCAAA CAATGGGGAT GTGTGTCGAT GGTGTTCGGT 
GGATTGTCTT ACCAAATTTA CCTGAAATGG AGGAAGCTGC AGAGAATGCA 
GAAGAAGAAA AAGGCCTGAA GCTGAGATTG GGGATCAAAA TATTTAATTC 
TTCAAGAAAA TTGTTTTTGA TTTGGAAACT TTTTACTTCC AAATATGTCT 
GAAAGTTAGA GAGAAGAAAG CTTAGTCCAT TAGCAAAATG TAAACTAATG 
CATTAGAAGA AACTTATATA TATCAAACCA AAAGACAAAT CATATATTTC 
CACC

Gene models with high sequence identity

  1. AT1G14360.1 [+] show detail - UDP-galactose transporter 3
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam UAA transporter 3.8e-94
superfamily Multidrug resistance efflux transporter EmrE 0.00035
superfamily Multidrug resistance efflux transporter EmrE 0.00062
HMMPanther UDP-GALACTOSE TRANSPORTER B1 (SLC35B1) 5.8e-149
HMMPanther UDP-GALACTOSE TRANSPORTER-RELATED 5.8e-149

See the detailed result >

AT1G14360.1

Model type
Protein coding
Short Description
UDP-galactose transporter 3
Computational Description
UDP-galactose transporter 3 (UTR3); FUNCTIONS IN: pyrimidine nucleotide sugar transmembrane transporter activity; INVOLVED IN: transmembrane transport; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: UAA transporter (InterPro:IPR013657); BEST Arabidopsis thaliana protein match is: UDP-galactose transporter 1 (TAIR:AT2G02810.1); Has 1048 Blast hits to 1040 proteins in 233 species: Archae - 0; Bacteria - 0; Metazoa - 487; Fungi - 154; Plants - 232; Viruses - 0; Other Eukaryotes - 175 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-09-L23 introduced

  • F15623 - seed::increased size
  • F19634 - seed::increased size

Mutant lines with disrupted or induced

6 mutant lines found