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RAFL06-09-M03

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda02957)

full reading [+] show sequence

Nucleotide sequence: RAFL06-09-M03 - full reading 
ATCCATCCAT CACTCGCCAA AAACCTTGAA ACCTTTAAAA AATCGAAACT 
ATGGCTAAGC TCATTCTCGT TTTCGCAACT CTTGCCCTCT TCATCCTCCT 
AGCCAACGCA TCCATCTACC GCACAGTGGT GGAGTTCGAG GAAGATGATG 
ACGTGAGCAA CCCACAACAA GGTAAGTGCC AGAGGGAGTT TATGAAGCAT 
CAGCAACTAA GAGGTTGCAA GCAATGGATC CGCAAGAGAG CTCAACAAGG 
AAGAATCGGA TACGAAGCTG ATGACTTTGA GCTCACTCTT GATGTCGATC 
TTGAGGACGA TGAGAACCCA ATGGGGCCTC AACAACAGTC ATCTCTTAAA 
ATGTGTTGTA ATGAATTAAG GCAAGTGGAC AAGATGTGTG TGTGTCCTAC 
ACTGAAAAAG GCGGCTCAAC AAGTCAGATT CCAGGGAATG CATGGACAGC 
AACAGGTGCA ACATGTGTTT CAGACTGCTA AGAACTTGCC TAACGTTTGC 
AAAATCCCTA CCGTTGGATC CTGCCAGTTC AAGGCATCTC CTTACTAGGA 
CCATGAAGAG GACCAAACTA TAAAAGCACA CACGTACACA TGGTGGTTTT 
GTTAATGATA ATAAAAAGTC TCTCTCTTGT GGCGTGTTCG TGTTTGTATA 
GTAGATAAAT GTTTGTACTG TATGAGTTAG AGTCTTAGTG GCAATATTAC 
ACCTTCTAGT GTAATGTAAC TTGCCCTACC CCCTTAAATA AAAGATGTTC 
TTGGGTATC

Gene models with high sequence identity

  1. AT5G54740.1 [+] show detail - seed storage albumin 5
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
FPrintScan Napin/ Bra allergen 2.9e-24
FPrintScan Napin/ Bra allergen 2.9e-24
FPrintScan Napin/ Bra allergen 2.9e-24
FPrintScan Napin/ Bra allergen 2.9e-24
FPrintScan Napin/ Bra allergen 2.9e-24
HMMSmart Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor 2.2e-05
HMMPfam Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor 2.6e-08
superfamily Bifunctional inhibitor/plant lipid transfer protein/seed storage 1e-27
Gene3D Bifunctional trypsin/alpha-amylase inhibitor 5.4e-27

See the detailed result >

AT5G54740.1

Model type
Protein coding
Short Description
seed storage albumin 5
Computational Description
seed storage albumin 5 (SESA5); FUNCTIONS IN: lipid binding, nutrient reservoir activity; INVOLVED IN: lipid transport, pollen development; LOCATED IN: endomembrane system; EXPRESSED IN: shoot apex; CONTAINS InterPro DOMAIN/s: Bifunctional trypsin/alpha-amylase inhibitor (InterPro:IPR013771), Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Napin/ Bra allergen (InterPro:IPR000617), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612); BEST Arabidopsis thaliana protein match is: seed storage albumin 3 (TAIR:AT4G27160.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-09-M03 introduced

  • F12828 - Specific phenotypes were NOT observed.
  • F30026 - rosette leaf::dark green / rosette leaf::epinastic / stem::abnormal / fruit::decreased length

Mutant lines with disrupted or induced

3 mutant lines found