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  3. RAFL06-09-N10

RAFL06-09-N10

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda07523)

full reading [+] show sequence

Nucleotide sequence: RAFL06-09-N10 - full reading 
GAGAGCAAAG ACTTGACCTT TTTCACTTCC TTCTCACTGA TCGTCGAACA 
ATAAGGCCGT CGCATCTCCC AGTTATGGCT ATGGCCGGAG AATCTTCCGG 
CAAAAAAATT GGAGACTGTG ACGGTAAAGT CGCGGGGAAC AGACAGCGAA 
AGGTGGGTCT TATTTACGAC GAGACGATGT GCAAACACGA CACACCTGAC 
GGCGAGGATC ACCCTGAGTG TCCCGACCGC ATCAGAGTTA TCTGGGAGAA 
GCTTCAGCTC GCCGGAGTTT CTCAAAGATG TGTGGTTCTT GGTAGTAGCA 
AAGCAGAAGA TAAGCATCTC CAATTGGTTC ACACAAAGGA CCATGTTAAT 
TTAGTTAAGA GTATTAGCAC AAAACAGAAA GATTATCGGA GAAACAGGAT 
TGCTTCACAG TTGAATTCGA TTTATCTGAA TGGAGGTTCA TCTGAAGCCG 
CATATCTTGC AGCTGGTTCT GTTGTAAAGT TGGCAGAAAA AGTTGCAGAA 
GGAGAGTTAG ATTGTGGTTT TGCTATTGTC AGGCCCCCAG GGCACCATGC 
TGAGGCAGAT GAAGCCATGG GTTTTTGTTT ATTCAACAAT GTTGCCGTTG 
CTGCTAGTTT TTTACTAAAC GAAAGACCGG ATCTAGGGGT CAAGAAAATT 
CTGATCGTTG ATTGGGATGT CCATCACGGA AATGGTACCC AGAAGATGTT 
TTGGAAAGAT CCTCGTGTAC TATTTTTCTC TGTTCATAGG CATGAGTATG 
GGGGTTTCTA TCCAGCGGGT GATGATGGCG ATTATAACAT GGTTGGGGAA 
GGTCCAGGTG AAGGGTTTAA CATAAATGTT CCATGGGATC AAGGACGATG 
TGGAGATGCA GATTATCTTG CTGCATGGGA CCATATCTTG ATTCCTGTGG 
CGAGGGAATT TAACCCGGAT GTTATTTTTC TTTCAGCTGG ATTTGATGCA 
GCTATTAATG ATCCGCTAGG GGGTTGTTGT GTGACCCCAT ATGGATATTC 
AGTTATGTTG AAGAAGCTGA TGGAGTTTGC ACAAGGAAAG ATAGTGCTGG 
CGTTAGAGGG AGGGTACAAT CTTGACTCAA TTGCAAAGTC TTCACTTGCA 
TGTGTCCAAG TTTTGCTTGA AGACAAACAA ATTCAAGGAC CTCCGGAAGC 
ATACCCATTC GAGTCGACAT GGCGTGTCAT ACAAGCGGTG CGCAAGAGGC 
TATGCACATA TTGGCCTTCA CTTGCAGATG AATTATCGTG GAAGCTAATT 
AATCAGAAAA CTCCTACTCC AATCATCCTT ATCTCAAGCT CCGACTCTGA 
AACTGAAGAC AACGCCCAAG GACTCCTGGA TCAAATGTCG AAACTCAGCA 
TTGAAAACCC TCAAGGTACA CTACTTGAAA ACCACCAAGT AGAACCTGCA 
TCTACATCTT GGAGAGCTGA TCTCGCAAAG GTTGACGTTT GGTATGCCTC 
TTTTGGATCC AACATGTGGA AACCAAGGTT TCTTTGCTAT ATTCAAGGGG 
GACAGGTCGA TGGATTGAAA AAGGTATGTG TTGGCTCAAT GGATAAAAGT 
CCACCAAAGG AAACAGTGTG GGAAACATTT CCACATAGAT TGTTCTTTGG 
CCGTGAATCT TCAGTTGGTT GGGGTGTAGG AGGAGTTGCT TTCACCAACC 
CCCTTGCTAA TCTCATTGAT CAAACTCACA TGTGTTTGTA CCGTATCACG 
CTTGAGCAGT TCAATGACGT TCTGTCTCAA GAAAATGGTT TGAATGTGGA 
TTCAGATTCT CCGGTCTTTG ATCTAGCTGC TTTGCAGTTA GTAGATAACA 
AAGGATCCAT TTTAGAAGCT CCTTTGAATA GTTGGTATGG AAATGTTGTC 
TGCTTGGGAA AAGAACGCGA CATTCCTATA CTTACAATGA CTTGCACGCT 
TTCCGCTGTT GAGAAATTCA AATCCGGTGA GATCCCTATA AGACCTCCTG 
CAAAAGCTTA TGCCAACACT TTAATAAGGG GACTTGTGGA AGGAGGAAGA 
TTATCTAAAG AAGAAGCTGA GGCTTACATA GACAAGGCTG TGTCTAAACC 
TCTCTAGTGT ATAATTATTT ACTCAGAAAC CGCCCGTTTG AACACGATTT 
GGAGCTTCGG GTTTCTGAGT TATTCAATTA GGATAAAAAC CACAAGTTTA 
GGAATATTGT GAGACCTTTG AATTTGTCTT TTGAAAGAGA GGACTGTGTC 
CTCTGTTAGC TGTGTTGTGC TTGCTCCCTA AGCAAACTCT CAATGTATTT 
TAGTTATCTT CGGGTTTTAG GCTTTACCAA GAAGCTGTAT TCGGTAAATG 
TATTAAAGAA CCCTCCAAAC TGCTTTATAT TGACCGGAGA GAAACATTCT 
TATTCTTCGG AATGGTACTT TGAAGTTTGA AGAGTTATTT TAGAAAAAAA 
AAAAAAAAA

Gene models with high sequence identity

  1. AT5G61060.1 [+] show detail - histone deacetylase 5
    E-value: 0; Score: 99.96

 

InterPro Scan Digest

Program Description E-value
HMMPfam Histone deacetylase superfamily 8.1e-93
HMMPanther HISTONE DEACETYLASE HDA1 0
HMMPanther Histone deacetylase superfamily 0
superfamily Arginase/deacetylase 1.2e-111
FPrintScan Histone deacetylase superfamily 2.2e-08
FPrintScan Histone deacetylase superfamily 2.2e-08
Gene3D Histone deacetylase superfamily 1.2e-100

See the detailed result >

AT5G61060.1

Model type
Protein coding
Short Description
histone deacetylase 5
Curator Summary
Encodes a member of the histone deacetylase family.
Computational Description
histone deacetylase 5 (HDA05); CONTAINS InterPro DOMAIN/s: Histone deacetylase superfamily (InterPro:IPR000286); BEST Arabidopsis thaliana protein match is: histone deacetylase of the RPD3/HDA1 superfamily 18 (TAIR:AT5G61070.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-09-N10 introduced

  • F05522 - Specific phenotypes were NOT observed.
  • F18916 - Specific phenotypes were NOT observed.
  • F21530 - Specific phenotypes were NOT observed.
  • F22244 - Specific phenotypes were NOT observed.
  • F27815 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

7 mutant lines found