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RAFL06-09-P22

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda02965)

full reading [+] show sequence

Nucleotide sequence: RAFL06-09-P22 - full reading 
ATCATCTTCT TCACTAAACA AAAAAAAACC CTTCAAAACA TTTCCTTATT 
CTTTCTTCTT CATCTACAAC AATGGCTGGA GTTGCCTTTG GTTCCTTTGA 
TGATTCATTC AGCTTGGCTT CTCTAAGAGC TTACCTCGCT GAGTTCATCT 
CCACTTTACT CTTTGTTTTC GCTGGTGTTG GCTCTGCCAT TGCCTACGCA 
AAGCTGACGT CGGACGCTGC TCTTGATACA CCGGGACTAG TGGCCATCGC 
GGTTTGTCAT GGTTTTGCTC TCTTCGTGGC CGTTGCAATC GGAGCCAACA 
TCTCCGGTGG CCATGTGAAC CCAGCCGTCA CTTTTGGTCT TGCTGTCGGT 
GGTCAAATCA CAGTCATCAC CGGAGTTTTC TACTGGATCG CTCAGCTTCT 
CGGCTCCACC GCCGCTTGTT TCCTCCTTAA ATACGTCACC GGTGGATTGG 
CGGTTCCAAC CCACAGCGTT GCGGCTGGAC TAGGATCGAT AGAAGGAGTA 
GTGATGGAGA TCATCATCAC CTTCGCTTTG GTCTACACTG TCTACGCCAC 
CGCCGCTGAT CCCAAGAAGG GTTCTCTCGG AACCATCGCT CCTCTCGCCA 
TTGGTCTTAT CGTTGGTGCC AACATCCTCG CCGCCGGTCC ATTCTCCGGT 
GGATCCATGA ACCCAGCACG TTCCTTTGGA CCAGCTGTTG CTGCCGGAGA 
CTTCTCTGGT CACTGGGTCT ACTGGGTTGG ACCACTCATC GGTGGTGAAC 
TTGCCGGACT TATCTACGGA AATGTCTTCA TGGGTTCTTC CGAACATGTT 
CCTCTTGCTT CTGCTGATTT CTAAGGAAAC AAGTGATGAT TCTTGATTCA 
TGTTTCTGTG TTTGGTTACT TTGCCTCGAT CTTTCTTGTT TTGTTTGGAG 
TTTGGTCCGG TTTCGTTGTA ATTTTTATC

Gene models with high sequence identity

  1. AT3G16240.1 [+] show detail - delta tonoplast integral protein
    E-value: 0; Score: 99.89

 

InterPro Scan Digest

Program Description E-value
PatternScan Major intrinsic protein, conserved site 0
Gene3D Major intrinsic protein 2.9e-63
FPrintScan Major intrinsic protein 8.8e-56
FPrintScan Major intrinsic protein 8.8e-56
FPrintScan Major intrinsic protein 8.8e-56
FPrintScan Major intrinsic protein 8.8e-56
FPrintScan Major intrinsic protein 8.8e-56
FPrintScan Major intrinsic protein 8.8e-56
HMMPanther TONOPLAST INTRINSIC PROTEIN 7.1e-126
HMMPanther Major intrinsic protein 7.1e-126
HMMPfam Major intrinsic protein 4.7e-76
superfamily Major intrinsic protein 2.2e-62
HMMTigr Aquaporin 5.3e-68

See the detailed result >

AT3G16240.1

Model type
Protein coding
Short Description
delta tonoplast integral protein
Curator Summary
Delta tonoplast intrinsic protein, functions as a water channel and ammonium (NH3) transporter. Highly expressed in flower, shoot, and stem. Expression shows diurnal regulation and is induced by ammonium (NH3). Protein localized to vacuolar membrane.
Computational Description
delta tonoplast integral protein (DELTA-TIP); FUNCTIONS IN: water channel activity, ammonia transmembrane transporter activity, urea transmembrane transporter activity, methylammonium transmembrane transporter activity; INVOLVED IN: transport, urea transport, water transport; LOCATED IN: in 10 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Major intrinsic protein, conserved site (InterPro:IPR022357), Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: tonoplast intrinsic protein 2;3 (TAIR:AT5G47450.1); Has 10937 Blast hits to 10900 proteins in 2182 species: Archae - 87; Bacteria - 5160; Metazoa - 1503; Fungi - 423; Plants - 2497; Viruses - 0; Other Eukaryotes - 1267 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-09-P22 introduced

  • F19339 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

3 mutant lines found