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RAFL06-10-A06

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda02967)

full reading [+] show sequence

Nucleotide sequence: RAFL06-10-A06 - full reading 
AATTCACTTC TACAAAATAT AAAGTCTCTC CCACAGTGTA AACTCTTCCT 
CCACAAATTT TAAAGGAAGA CAAAATGATT TGGTGGTTTA TCGTTGGTGC 
ATCCTTTTTC TTTGCATTTA TACTCATTGC AAAGGACACG AGAACAACAA 
AAAAGAATCT ACCTCCAGGA CCACCAAGAC TTCCTATAAT TGGAAACTTG 
CACCAATTGG GATCAAAACC TCAGCGTTCA CTATTCAAAT TATCTGAAAA 
GTATGGATCT CTAATGTCTC TAAAGTTTGG AAATGTGTCT GCTGTTGTGG 
CATCAACTCC AGAGACGGTG AAGGATGTCT TAAAAACATT CGACGCAGAG 
TGTTGTTCCC GACCTTATAT GACTTATCCC GCAAGAGTTA CATACAATTT 
TAACGATCTC GCATTTTCGC CCTATAGCAA ATATTGGAGG GAAGTACGAA 
AGATGACGGT CATTGAGCTA TACACCGCGA AAAGGGTCAA ATCGTTTCAA 
AATGTAAGAC AAGAAGAAGT TGCCTCATTC GTTGATTTCA TCAAACAACA 
TGCTTCATTG GAGAAAACAG TTAATATGAA ACAGAAGTTA GTGAAACTCT 
CTGGGAGTGT GATTTGTAAA GTTGGATTTG GCATAAGTCT TGAATGGAGC 
AAACTTGCGA ATACTTATGA GGAAGTCATT CAAGGAACCA TGGAGGTGGT 
GGGGCGTTTC GCAGCAGCGG ATTACTTCCC GATTATTGGT AGAATCATCG 
ATAGGATCAC GGGGTTACAT AGCAAATGTG AGAAGGTTTT TAAGGAAATG 
GATTCGTTTT TTGATCAATC TATAAAGCAT CACCTAGAAG ATACTAATAT 
CAAAGACGAT ATCATTGGTT TGCTACTAAA GATGGAAAAG GGAGAGACAG 
GACTTGGAGA GTTTCAACTT ACACGAAACC ACACTAAAGG AATTCTTCTA 
AACGTTCTTA TCGCTGGAGT GGACACTTCT GGCCACACTG TGACATGGGT 
GATGACACAT TTGATTAAAA ACCCAAGAGT TATGAAGAAA GCGCAAGCCG 
AGGTAAGAGA AGTGATCAAA AACAAAGATG ATATCACAGA AGAAGATATA 
GAACGACTCG AATATTTGAA AATGGTGATT AAAGAAACAT TAAGGATCAA 
CCCACTTGTG CCACTTCTGA TTCCAAGAGA GGCTTCAAAA TATATAAAGA 
TTGGAGGTTA CGAC

Gene models with high sequence identity

  1. AT5G25180.1 [+] show detail - cytochrome P450, family 71, subfamily B, polypeptide 14
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
FPrintScan Cytochrome P450, E-class, group I 1e-22
FPrintScan Cytochrome P450, E-class, group I 1e-22
FPrintScan Cytochrome P450, E-class, group I 1e-22
FPrintScan Cytochrome P450, E-class, group I 1e-22
FPrintScan Cytochrome P450, E-class, group I 1e-22
FPrintScan Cytochrome P450, E-class, group I 1e-22
FPrintScan Cytochrome P450, C-terminal 7.4e-05
FPrintScan Cytochrome P450, C-terminal 7.4e-05
superfamily Cytochrome P450 1.4e-81
HMMPfam Cytochrome P450 3.3e-66
HMMPanther CYTOCHROME P450, SUBFAMILY 71B 1.2e-203
HMMPanther Cytochrome P450 1.2e-203
Coil coiled-coil 0
Gene3D Cytochrome P450 4.7e-78

See the detailed result >

AT5G25180.1

Model type
Protein coding
Short Description
cytochrome P450, family 71, subfamily B, polypeptide 14
Curator Summary
putative cytochrome P450
Computational Description
"cytochrome P450, family 71, subfamily B, polypeptide 14" (CYP71B14); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: oxidation reduction; LOCATED IN: cellular_component unknown; EXPRESSED IN: inflorescence meristem; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: ytochrome p450, family 71, subfamily B, polypeptide 11 (TAIR:AT5G25120.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-10-A06 introduced

  • F06807 - seed::increased size / seed::increased length
  • F29815 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

3 mutant lines found