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  3. RAFL06-10-A12

RAFL06-10-A12

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda12255)

full reading [+] show sequence

Nucleotide sequence: RAFL06-10-A12 - full reading 
AAGAAGAAGA AATAGAAAAG TTCGGATTTT GATCTGTGTG GTTGGATTGT 
TGCAAGAACT AAACCAGACC CACCTTTCAA AACTTTGTCC CTAACGAACA 
ACATTAATCA TTCATTCTCC TGTGTGAGCT CTTCCTCTTC TTCTGTTTAA 
GGTTCTTTCT CCTTCTTCTT TTGAGGGGGT TTAAAGCTTC AGTGGACGAA 
AAGAGTTTGT TTTTTGGGTG ACAATGGGAG GAGTGGTGCA TCTTAGCACG 
GCGAAGTTAG CTAGAGGTTT CTTAGTGTGT TTATGTCTTT GGGGTTTTTT 
CTCGCTATCA TACGCCGCAA GGTCCGGCGT ATCAAAGCAG AAGTTTGAAG 
TGAAGAAACA TTTGAACAGG CTGAACAAAC CTGCTGTCAA AAGCATTCAG 
AGTTCAGATG GTGATGTGAT TGACTGTGTT CCAATCTCAA AGCAACCAGC 
TTTTGATCAT CCGTTCCTCA AAGATCACAA GATTCAGATG AAGCCTAATT 
ACCACCCTGA AGGACTCTTT GATGACAACA AAGTGTCTGC TCCTAAATCA 
AATGAGAAAG AAGGGCATAT TCCTCAGTTG TGGCATCGAT ATGGTAAATG 
TTCTGAAGGA ACTATTCCCA TGAGGAGGAC AAAGGAAGAT GATGTTTTGA 
GAGCAAGTTC AGTTAAAAGA TATGGCAAGA AGAAGCGTAG AAGTGTCCCT 
TTACCTAAAT CTGCAGAACC TGACCTTATT AACCAAAGTG GTCACCAGCA 
TGCCATAGCT TATGTAGAAG GAGATAAGTA CTATGGAGCT AAGGCTACTA 
TAAATGTGTG GGAGCCAAAG ATACAGCAGC AGAATGAGTT CAGCTTGTCA 
CAGATATGGC TTCTTGGTGG CTCATTCGGA CAAGATCTTA ATAGCATCGA 
AGCTGGTTGG CAGGTGAGCC CGGATCTGTA TGGTGACAAT AACACGAGAC 
TCTTCACTTA CTGGACTAGT GATGCATATC AAGCTACCAG TTGCTACAAT 
CTTCTTTGCT CCGGTTTTAT TCAAATCAAC AGTGACATAG CAATGGGAGC 
AAGCATTTCC CCGGTCTCTG GATATCGTAA CTCGCAGTAC GATATCAGTA 
TTCTGATCTG GAAGGATCCT AAAGAGGGAC ACTGGTGGAT GCAATTTGGG 
AACGGCTATG TTTTAGGCTA TTGGCCATCT TTTCTCTTCT CCTACTTGAC 
AGAAAGTGCA TCGATGATTG AATGGGGAGG AGAAGTCGTG AACTCACAAT 
CAGATGGCCA GCACACTTCA ACACAAATGG GCAGTGGTAA ATTTCCAGAA 
GAAGGCTTTA GCAAAGCAAG TTACTTCAGG AACATTCAGG TGGTTGATGG 
GTCAAACAAC CTCAAGGCAC CTAAAGGACT TGGAACATTC ACTGAACAGT 
CTAACTGTTA TGATGTTCAA ACCGGAAGCA ATGATGATTG GGGTCATTAC 
TTTTACTATG GAGGCCCTGG TAAAAACCAG AAGTGTCCAT AAGCTAGGCT 
CCAAGTAGTA GTGGCTCGTC TCTCGAGTTA TCTTGTCTTG TGAATTCACC 
TTGTTTCTTT CTACACACAC TCACTCAAAT CCGCCTTCTT GGGTAGTTTT 
TAGGGATGGT TAAAGTTATG TAATGGTAAA AGTTTGGTGT CTTTTTCTCC 
ATGTAAGTAG GTGGGGAAGA AGTGGAAAGG TGTGGCTTAA GTTTCTTTGA 
AAACTCAGAA ACTTTGGCCC TTAGTGTAAT TTTACTTTGT CTCCTTTGTA 
TTGTGATTTG TTTAAACAAG TGAATGAATC TCTCTTTCTC

Gene models with high sequence identity

  1. AT1G55360.1 [+] show detail - Protein of Unknown Function (DUF239)
    E-value: 0; Score: 99.94

 

InterPro Scan Digest

See the detailed result >

AT1G55360.1

Model type
Protein coding
Short Description
Protein of Unknown Function (DUF239)
Computational Description
Protein of Unknown Function (DUF239); INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: Protein of Unknown Function (DUF239) (TAIR:AT3G13510.1); Has 753 Blast hits to 700 proteins in 28 species: Archae - 0; Bacteria - 15; Metazoa - 0; Fungi - 10; Plants - 728; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-10-A12 introduced

  • F11709 - Specific phenotypes were NOT observed.
  • F18042 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

5 mutant lines found