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RAFL06-10-C01

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda02971)

full reading [+] show sequence

Nucleotide sequence: RAFL06-10-C01 - full reading 
TGACTCACAC CAAAAAGACG ACGATGGTTT CGTTTCGCTT CCCTTTCTCG 
TTTTCTCAGC CCCCGCGTGC CACCACGTCA TTCTCCGGAT TCTCCATTTC 
CGCTGTCGCT GTCTCCGTCA CCGTTGGCGC CGCAGCCGCC GGAGCTGCGA 
TCGCGGCGTC CCGGAATCCC AGCCATCCGA TTCTAGAGTG GGCCTTCTCC 
TCTCACCGTT CGTCTCTTTC ACCATGGGGA TCTATAACTC TAGCAGACGA 
ATCCGTTGTC GAACCTAAGA CCGGTTTCTC GTTTCCCGCT TCAATCGGAG 
ATTCCCGGCG ATTACTCGGC GTCGGCCTGA GGAAGAAGAG CTTACTGGGA 
TTGAAGAACA TCGATGTCTA CGCCTTCGGC GTGTATGCTG ATTGTGATGA 
TGTGAAGAAA CTTGTGGGAG ACAAGTACGC AAATCTTCCA GCTTCAGAGA 
TCAGGGGAAA CAAGTCATTC ATGGATGATC TCATGGAAGC CGATATTAAG 
ATGACGATAA GGCTACAGAT TGTCTACGGC AAACTCAACA TCCGATCCGT 
GCGTAATGCT TTCCAAGAGT CTGTTGGAAA CAGACTCAAG AAGTTCGGTG 
GCTCAGACAA TGACGAGTTG CTTCAAAGCT TCACTAGCCT CTTCAAAGAT 
GAGTATAAGA TTCCAAGAAA CTCCACCATT GATTTGACAA AAGATCCGGG 
CCATGTACTC AGCGTTGCAA TTGAGGGGAA CCATGTCGGG AGTGTGAAGA 
GCCATCTCTT GTGTAGATCA ATCTTAGACT TGTACATTGG TGAAGAACCG 
TTTGATAAGA ATGCAAGAGA AGATTTTCTA GACAATGCAG CTTCTCTAGC 
CTTCGACAAC TAGTTCACAA CAAAATGTTG CTTTCTTTCT TTCTTAACGG 
ATTCTCTATA TATACGGCAT AATGTTGAGG AATGTATTTG AAATAAATTG 
CTTGGGGAAT TGGGTTTTGT TAGTCT

Gene models with high sequence identity

  1. AT3G63170.1 [+] show detail - Chalcone-flavanone isomerase family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam Chalcone isomerase, subgroup 2.7e-42
superfamily Chalcone isomerase 2.8e-26

See the detailed result >

AT3G63170.1

Model type
Protein coding
Short Description
Chalcone-flavanone isomerase family protein
Computational Description
Chalcone-flavanone isomerase family protein; FUNCTIONS IN: intramolecular lyase activity; INVOLVED IN: cellular amino acid derivative biosynthetic process; LOCATED IN: mitochondrion, chloroplast, plastid, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chalcone isomerase, subgroup (InterPro:IPR003466), Chalcone isomerase (InterPro:IPR016087); BEST Arabidopsis thaliana protein match is: Chalcone-flavanone isomerase family protein (TAIR:AT2G26310.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-10-C01 introduced

  • F09205 - Specific phenotypes were NOT observed.
  • F11035 - Specific phenotypes were NOT observed.
  • F11037 - Specific phenotypes were NOT observed.
  • F13701 - Specific phenotypes were NOT observed.
  • F20127 - Specific phenotypes were NOT observed.
  • F27734 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

12 mutant lines found