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RAFL06-10-C10

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda07527)

full reading [+] show sequence

Nucleotide sequence: RAFL06-10-C10 - full reading 
CCCTCGTCGC TGCGTCTCTC TCCCGCAACC TTCGATTTTC GTTTATTCGC 
ATCCATCGGA GAGAGAAAAC AATCAATAAG CGACCATGTT GGTGTACCAA 
GATCTTCTCA CCGGTGATGA GCTTCTGTCT GACTCTTTCC CTTACAAGGA 
GATTGAGAAT GGAATCCTCT GGGAAGTAGA AGGAAAGTGG GTTACTGTGG 
GAGCTGTAGA TGTTAACATT GGTGCCAATC CATCTGCTGA AGAAGGTGGT 
GAGGATGAAG GTGTTGATGA CTCTACTCAA AAGGTTGTTG ACATTGTCGA 
CACCTTCAGA CTTCAGGAGC AACCAACTTA TGACAAGAAG GGATTCATCG 
CTTACATTAA GAAATACATT AAGCTTTTGA CACCCAAGCT CAGCGAAGAA 
GATCAAGCTG TCTTCAAGAA GGGTATTGAG GGAGCTACCA AGTTTTTGCT 
CCCCAGGCTC AGTGACTTCC AATTCTTTGT TGGGGAGGGT ATGCATGATG 
ACAGCACTTT GGTCTTTGCT TACTACAAGG AGGGTTCAAC TAACCCAACA 
TTTTTGTACT TCGCTCATGG TTTGAAGGAG GTCAAGTGCT GAGAGAGAAG 
CTCTCGTTGG GTTACTGTGG TCGGTCGCAG CGACTCTCTA AGTTTATGTT 
TCTTTATATT GTCCTGTGTT TCGTCGTCGT CCCCTATTAA AATTACCTGC 
CAGTTTACTT TTCTCTCTTC TTGTTTTCTG TGTTGGAAGA TTCTCAAGTT 
ATTTATTCCG C

Gene models with high sequence identity

  1. AT3G16640.1 [+] show detail - translationally controlled tumor protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
Gene3D Mss4/translationally controlled tumour-associated TCTP 2.7e-35
PatternScan Translationally controlled tumour protein, conserved site 0
PatternScan Translationally controlled tumour protein, conserved site 0
HMMPanther Translationally controlled tumour-associated TCTP 1.6e-91
HMMPfam Translationally controlled tumour-associated TCTP 6.4e-62
superfamily Mss4-like 1.4e-64
FPrintScan Translationally controlled tumour protein 6.3e-25
FPrintScan Translationally controlled tumour protein 6.3e-25
FPrintScan Translationally controlled tumour protein 6.3e-25

See the detailed result >

AT3G16640.1

Model type
Protein coding
Short Description
translationally controlled tumor protein
Curator Summary
Encodes a protein homologous to translationally controlled tumor protein (TCTP) from Drosophila. In flies, TCTP functions guanine nucleotide exchange factor in the TOR signaling pathway. TCTP is expressed throughout the plant with highest levels seen in meristematic regions of the shoot and root. Loss of function alleles are not transmitted through the male gametophyte due to defects in pollen tube growth. Hypomorphs, generated through RNAi, are dwarf and have smaller cells. These plants also have defects in lateral and primary root growth as well as root hair growth. The phenotypes are similar to TOR mutants suggesting that TCTP functions in the is pathway in Arabidopsis as well.
Computational Description
translationally controlled tumor protein (TCTP); INVOLVED IN: in 8 processes; LOCATED IN: in 6 components; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Translationally controlled tumour protein (InterPro:IPR018105), Mss4/translationally controlled tumour-associated TCTP (InterPro:IPR011323), Translationally controlled tumour protein, conserved site (InterPro:IPR018103), Mss4-like (InterPro:IPR011057); BEST Arabidopsis thaliana protein match is: Methionine sulfoxide reductase (MSS4-like) family protein (TAIR:AT3G05540.1); Has 867 Blast hits to 867 proteins in 310 species: Archae - 0; Bacteria - 0; Metazoa - 452; Fungi - 160; Plants - 158; Viruses - 0; Other Eukaryotes - 97 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-10-C10 introduced

  • F01607 - Specific phenotypes were NOT observed.
  • F02033 - Specific phenotypes were NOT observed.
  • F03541 - Specific phenotypes were NOT observed.
  • F04632 - Specific phenotypes were NOT observed.
  • F07514 - Specific phenotypes were NOT observed.
  • F08716 - Specific phenotypes were NOT observed.
  • F09238 - Specific phenotypes were NOT observed.
  • F10004 - Specific phenotypes were NOT observed.
  • F10133 - Specific phenotypes were NOT observed.
  • F10219 - Specific phenotypes were NOT observed.
  • F11301 - seed::increased size
  • F11637 - Specific phenotypes were NOT observed.
  • F11729 - rosette leaf::increased length / cauline leaf::epinastic / stem::abnormal / stem::abnormal
  • F12905 - Specific phenotypes were NOT observed.
  • F13823 - seed::increased size / seed::increased length
  • F16309 - Specific phenotypes were NOT observed.
  • F20731 - Specific phenotypes were NOT observed.
  • F20833 - Specific phenotypes were NOT observed.
  • F27014 - Specific phenotypes were NOT observed.
  • F28441 - rosette leaf::abnormal / rosette leaf::present in greater numbers in organism / rosette leaf::abnormal / cauline leaf::decreased size / stem::abnormal / root::abnormal
  • F30043 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

22 mutant lines found