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RAFL06-10-C17

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda02973)

full reading [+] show sequence

Nucleotide sequence: RAFL06-10-C17 - full reading 
AATCTCGATC TCGAGAAAGA AAGAAAAAAA GAGAAGGCAT GGCCGCGGAA 
GAAGCGACGG AGTTCTACCT GAGATACTAT GTCGGTCACA AAGGGAAATT 
TGGACACGAG TTCCTGGAGT TCGAGTTTAG AGAGGACGGT AAGCTCCGTT 
ACGCCAATAA CTCTAACTAC AAGAACGATA CTATTATCCG CAAGGAGGTA 
TTTCTCACCC CCGCCGTGCT CAAGGAATGC AAGCGTATCG TCTCCGAGAG 
CGAGATTCTG AAAGAAGACG ATAACAATTG GCCGGAACCT GACCGTGTTG 
GAAAGCAAGA GCTCGAGATC GTCTTGGGTA ATGAGCATAT CTCATTCGCT 
ACATCTAAGA TTGGATCTCT TGTTGATTGC CAGAGCAGTA ATGATCCTGA 
AGGACTTCGC ATCTTCTACT ATCTTGTTCA GGACTTGAAA TGTCTTGTTT 
TTTCGCTCAT CTCTCTGCAC TTCAAAATCA AGCCTATCTA GAGAAGAAAA 
TCAGTTTGTG ACATGTCAAG ACGCGATGAA TTTGTTGGGA ACATGAGGAC 
TTTGTGACTG AAGTTTGGTT GTTTTTATGT CTCTGGTTCT CTGTTTTTTT 
TTTTTGTTGG ATTTGGGTGA AAGTGGGTAT GTAAGATGTT CTACCTCAAC 
TTTTAGTCCT TTTTTGTGTC AACATCCCAT GTGAAGAACC TTTCATGAAC 
CACAACCTAT CTTCTAAAAA CCATATACTT GCTGTTTTCT TAC

Gene models with high sequence identity

  1. AT1G02140.1 [+] show detail - mago nashi family protein
    E-value: 0; Score: 99.87

 

InterPro Scan Digest

Program Description E-value
superfamily Mago nashi protein 2.5e-78
HMMPfam Mago nashi protein 1e-88
HMMPanther Mago nashi protein 6e-109

See the detailed result >

AT1G02140.1

Model type
Protein coding
Short Description
mago nashi family protein
Computational Description
MAGO NASHI (MAGO); FUNCTIONS IN: protein binding; INVOLVED IN: pollen tube guidance, sex determination, embryo development ending in seed dormancy; LOCATED IN: in 6 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mago nashi protein (InterPro:IPR004023); Has 476 Blast hits to 476 proteins in 200 species: Archae - 0; Bacteria - 0; Metazoa - 223; Fungi - 96; Plants - 76; Viruses - 0; Other Eukaryotes - 81 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-10-C17 introduced

  • F13435 - Specific phenotypes were NOT observed.
  • F22103 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

6 mutant lines found