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  3. RAFL06-10-E18

RAFL06-10-E18

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda02979)

full reading [+] show sequence

Nucleotide sequence: RAFL06-10-E18 - full reading 
AGAAATCGAA AAAATCAGAT CTAGATCTAA AAGAAGAGCG TCTTCATAAA 
CGCCCTTCTT CTTCTTCGTC TTCTTCCCTG CAAATCTAGT TTCTAGATCT 
TTTCTTTCTT CCGCGAAACG AAAATGAGAG AGTGCATTTC GATCCACATT 
GGTCAGGCCG GTATCCAGGT CGGAAATGCT TGCTGGGAGC TTTACTGTCT 
TGAACATGGC ATTCAGCCTG ATGGCCAGAT GCCGAGTGAC AAGACTGTTG 
GCGGAGGTGA CGATGCTTTC AACACCTTCT TCAGTGAGAC CGGTGCAGGG 
AAGCACGTCC CACGTGCTGT CTTTGTTGAT CTTGAGCCAA CTGTGATCGA 
TGAGGTCAGG ACTGGTACTT ACCGTCAGCT TTTCCACCCT GAGCAACTCA 
TCAGCGGTAA AGAAGACGCA GCTAACAATT TCGCCCGTGG GCATTACACC 
ATTGGGAAAG AGATTGTTGA TCTGTGCTTG GACCGTATCA GAAAGCTCGC 
TGATAACTGT ACTGGTCTCC AAGGATTCCT CGTCTTCAAC GCTGTTGGTG 
GAGGGACTGG ATCTGGTCTT GGATCTCTCC TCCTTGAGAG ACTTTCTGTT 
GACTACGGGA AAAAGTCCAA GTTGGGTTTC ACAGTTTACC CATCTCCACA 
GGTCTCCACC TCTGTTGTTG AGCCTTACAA CAGTGTCCTC TCCACTCACT 
CACTCTTGGA ACACACTGAT GTCTCTATCC TCCTCGACAA TGAAGCTATC 
TATGACATCT GCAGACGTTC CCTAAGCATT GAGAGACCCA CCTACACCAA 
CCTCAACCGT CTCGTCTCTC AGGTTATCTC ATCCTTGACT GCTTCTCTGA 
GGTTCGATGG TGCCTTGAAT GTTGATGTGA CTGAGTTCCA AACCAACTTG 
GTCCCATACC CAAGAATCCA CTTCATGCTT TCCTCCTATG CCCCAGTCAT 
CTCCGCAGAG AAGGCCTTCC ATGAGCAGCT CTCGGTTGCT GAGATCACAA 
ACAGTGCTTT TGAGCCAGCA TCCATGATGG CAAAGTGTGA CCCTCGTCAC 
GGAAAGTACA TGGCTTGCTG TTTGATGTAC CGTGGTGATG TCGTCCCCAA 
GGATGTGAAC GCAGCTGTTG GCACCATCAA GACCAAGCGT ACTATTCAGT 
TTGTGGACTG GTGTCCTACT GGATTCAAGT GTGGAATCAA CTACCAGCCA 
CCAACTGTTG TTCCAGGAGG TGATCTTGCT AAAGTCCAGA GAGCTGTGTG 
TATGATCTCA AACTCCACCA GTGTTGCTGA GGTGTTCTCC CGTATTGATC 
ACAAGTTTGA TCTTATGTAC GCAAAACGTG CTTTCGTTCA CTGGTATGTG 
GGTGAGGGTA TGGAAGAAGG AGAATTTTCA GAGGCTCGTG AGGATCTTGC 
AGCATTGGAG AAGGATTACG AAGAGGTTGG TGCTGAAGGT GGTGACGATG 
AGGATGATGA AGGAGAGGAG TACTAAGAAG GTTGTCGGTT TTATGTGGGA 
TTTCTATTAT CTCGTGTTTG TGTGAATAGG CTCGAAACTC TTACGAGTCG 
TACTTGTGTT TTCAAAAACC ATATTTCTAT CTCTTGCTTG TGGCGGTAGC 
CATTTGTTC

Gene models with high sequence identity

  1. AT1G50010.1 [+] show detail - tubulin alpha-2 chain
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily Tubulin/FtsZ, N-terminal 8.6e-104
superfamily Tubulin/FtsZ, C-terminal 3.7e-83
HMMPanther Alpha tubulin 8.8e-236
HMMPanther Tubulin 8.8e-236
Gene3D Tubulin/FtsZ, GTPase domain 2.2e-120
Gene3D Tubulin/FtsZ, 2-layer sandwich domain 1.2e-47
Gene3D no description 1.1e-21
PatternScan Tubulin, conserved site 0
Coil coiled-coil 0
HMMSmart no description 1.9e-73
HMMSmart Tubulin/FtsZ, 2-layer sandwich domain 1.7e-52
FPrintScan Alpha tubulin 2.5e-119
FPrintScan Alpha tubulin 2.5e-119
FPrintScan Alpha tubulin 2.5e-119
FPrintScan Alpha tubulin 2.5e-119
FPrintScan Alpha tubulin 2.5e-119
FPrintScan Alpha tubulin 2.5e-119
FPrintScan Alpha tubulin 2.5e-119
FPrintScan Alpha tubulin 2.5e-119
FPrintScan Alpha tubulin 2.5e-119
FPrintScan Alpha tubulin 2.5e-119
FPrintScan Alpha tubulin 2.5e-119
FPrintScan Alpha tubulin 2.5e-119
FPrintScan Alpha tubulin 2.5e-119
FPrintScan Tubulin 8.9e-92
FPrintScan Tubulin 8.9e-92
FPrintScan Tubulin 8.9e-92
FPrintScan Tubulin 8.9e-92
FPrintScan Tubulin 8.9e-92
FPrintScan Tubulin 8.9e-92
FPrintScan Tubulin 8.9e-92
FPrintScan Tubulin 8.9e-92
FPrintScan Tubulin 8.9e-92
HMMPfam Tubulin/FtsZ, GTPase domain 4.2e-70
HMMPfam Tubulin/FtsZ, 2-layer sandwich domain 1.4e-50

See the detailed result >

AT1G50010.1

Model type
Protein coding
Short Description
tubulin alpha-2 chain
Curator Summary
Encodes alpha-2,4 tubulin. TUA2 and TUA4 encode identical proteins.
Computational Description
tubulin alpha-2 chain (TUA2); FUNCTIONS IN: structural constituent of cytoskeleton; INVOLVED IN: microtubule-based process, response to salt stress; LOCATED IN: tubulin complex, cytosol, cell wall, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Alpha tubulin (InterPro:IPR002452), Tubulin (InterPro:IPR000217), Tubulin/FtsZ, GTPase domain (InterPro:IPR003008), Tubulin/FtsZ, N-terminal (InterPro:IPR019746), Tubulin/FtsZ, C-terminal (InterPro:IPR008280), Tubulin, conserved site (InterPro:IPR017975), Tubulin/FtsZ, 2-layer sandwich domain (InterPro:IPR018316); BEST Arabidopsis thaliana protein match is: tubulin alpha-4 chain (TAIR:AT1G04820.1); Has 22626 Blast hits to 22529 proteins in 4679 species: Archae - 4; Bacteria - 25; Metazoa - 4391; Fungi - 13400; Plants - 1532; Viruses - 0; Other Eukaryotes - 3274 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-10-E18 introduced

  • F06625 - seed::increased size

Mutant lines with disrupted or induced

4 mutant lines found