1. Home
  2. Full-length cDNAs
  3. RAFL06-10-F05

RAFL06-10-F05

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda17173)

full reading [+] show sequence

Nucleotide sequence: RAFL06-10-F05 - full reading 
TGAAAAACCA AAACTCTTAT CTTCGGTACA GAGCAAATCA CAGCTCCCGA 
TGGCCGCCAC GTCATCATCA CCGCCGTGTA ACATCTCCGC GTCCTCCCTC 
CTCCTCCGTC AACCTTCTCG CTCAATCCTT AAAGTGTTCG GTTTATTACC 
ACCTGTAAGT AGGAATAACC GTAAACTCGG CCGGTTAACG GTGACCCGGT 
CTAATCTGGC GCAGGATTTT CTTGGTGACT TCGGAGCTCG TGACCCTTAC 
CCGGAGGAGA TAGCGAGTCA ATTCGGAGAT AAAGTGTTGG GATGCCAAAG 
CACTGAGCAC AAGATTTTGA TACCAAACGC ATCTGTTTTG TCTCTCTCCC 
AGCTTCAGTG TTCCCCTGTT TCGTCTTCAC AGCCTCCTTT GTCCGGCGAT 
GATGCCAGAA CTCTCCTCCA CAAGGTTTTG GGATGGAGTA TAGTGGATAA 
TGAAGCGGGT GGTCTGAAAA TAAGGTGTAT GTGGAAAGTG AGGGATTTTG 
GGTGCGGTGT TGAACTCATA AACAGGATCC ATAAGGTTGC TGAAGCTTCT 
GGTCATTACC CTTCTCTTCA CTTGGAAAGT CCTACCCAAG TTCGAGCTGA 
ACTATTTACC TCTTCTATCG GAGGGTTGAG CATGAATGAT TTCATAATGG 
CGGCTAAAAT AGATGATATC AAGACTTCTG ATCTTTCCCC TAGGAAAAGA 
GCTTGGGCGT GATCTTCTTT TCATTATTTT GGAACATTTT TGTTTGATAG 
TATGTAATGT ATGTGATGTA TTCTAAATTG TGTGTGATCG GTCTACATGT 
CGAGTTATAT AGAAAGCATT GTCATAACCG CATAAGAGAT ATCACGCAAC 
ATGTCTTTGA GATTCATTCA TCAATCAAAA GAAGAAAGAA CACCAAAAAA 
AAAA

Gene models with high sequence identity

  1. AT5G51110.1 [+] show detail - Transcriptional coactivator/pterin dehydratase
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily Transcriptional coactivator/pterin dehydratase 6.7e-20
HMMPanther Transcriptional coactivator/pterin dehydratase 8.2e-60
Gene3D Transcriptional coactivator/pterin dehydratase 0.00000000000057
HMMPfam Transcriptional coactivator/pterin dehydratase 8.5e-21

See the detailed result >

AT5G51110.1

Model type
Protein coding
Short Description
Transcriptional coactivator/pterin dehydratase
Computational Description
Transcriptional coactivator/pterin dehydratase; FUNCTIONS IN: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity; INVOLVED IN: tetrahydrobiopterin biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcriptional coactivator/pterin dehydratase (InterPro:IPR001533); BEST Arabidopsis thaliana protein match is: Transcriptional coactivator/pterin dehydratase (TAIR:AT1G29810.1); Has 1849 Blast hits to 1849 proteins in 364 species: Archae - 43; Bacteria - 697; Metazoa - 0; Fungi - 2; Plants - 93; Viruses - 0; Other Eukaryotes - 1014 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-10-F05 introduced

  • F18508 - Specific phenotypes were NOT observed.
  • F25119 - rosette leaf::increased width / stem::decreased thickness / whole plant::decreased height / fruit::decreased length
  • F28318 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

7 mutant lines found