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RAFL06-10-F19

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda02985)

full reading [+] show sequence

Nucleotide sequence: RAFL06-10-F19 - full reading 
GCAACGTAGG TTCTGGTGAA TGATCCTAAT CCGTTTAGCT TTAAAAAAAA 
ATAAGAAGAC ATATTTATCA ACTTGATCAA CTTGAGCAAG TTGCAGCAGA 
TATTTTCCTC GGCCAAGATC TAGAGTTTTG AGAATGGCGA TGGTATCAGG 
AAGACGATCT ACTCTAAACC CCGACGCACC TCTTTTTATT CCGGCAGCTG 
TACGACAAGT GGAAGATTTC TCACCGGAGT GGTGGCAATT GGTGACAACT 
TCGACTTGGT ACCCTGATTA CTGGATCAGT CAGCAGCAGC AAGGCGCGGA 
TGGTTTCTAT GACAACGGAG AGAATGAGAA TGGTGGAGGT CATATCGATG 
TAGCTGATCT TCTTCCAGAA TCATTTGATT TTGATGATAT GGAAGATTTC 
TTTGACACTG ATGCTGCTGA GTTTGATCAA GGATTCGATG GAAGAATGTA 
TTACCAAGCA CCTTCCGAAT TTGGCTTTGG AAAGAATGGT GAGATGGTTA 
AGAAATCAAG TGGAAACAGG AGCCCGAGAT CGATTGTGGA ACCAGCTAAG 
TATGCGGAAA AGCCAGCGAA ATGGGGAAAC CAGAGGGTTG CTGCTGCTCC 
GAGAAACATC CACCAGCCTC GCTGAAGAGA TATGTTGTTA ACTAGTCAGA 
GAAGTCAGAG CAGTTCGGTC TGTGTATCTT TAGCCACCAC TGTACCTTTG 
TAATTTTTAG TATTTGCTTC CACAACAAAA ATCTGTAACT TTGTATCTTT 
ATGATGTTCA TTCTCAAACT TGCTATCACA AAAATGTAAA AACATAAAAA 
AAAAAAAATG TAAACTTTGA AGAGAAATGA GAACTAGAGT TTATTTCC

Gene models with high sequence identity

  1. AT2G41430.2 [+] show detail - dehydration-induced protein (ERD15)
    E-value: 0; Score: 99.76

 

InterPro Scan Digest

See the detailed result >

AT2G41430.2

Model type
Protein coding
Short Description
dehydration-induced protein (ERD15)
Curator Summary
Encodes hydrophilic protein lacking Cys residues that is expressed in response to drought stress, light stress and treatment with plant-growth-promoting rhizobacteria (Paenibacillus polymyxa), possibly revealing a connection between responses to biotic and abiotic stress. Also identified as a CTC Interacting Domain (CID) protein in a yeast two hybrid screen using the PAB2 protein as bait. Contains PAM2 like domain which mediates interaction with PABC domain in PAB2.
Computational Description
EARLY RESPONSIVE TO DEHYDRATION 15 (ERD15); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G14270.2); Has 169 Blast hits to 169 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 169; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-10-F19 introduced

  • F01121 - Specific phenotypes were NOT observed.
  • F06636 - Specific phenotypes were NOT observed.
  • F09932 - rosette leaf::dark green / rosette leaf::abnormal / rosette leaf::increased width / stem::abnormal / sporophyte vegetative stage::decreased speed
  • F11620 - Specific phenotypes were NOT observed.
  • F15204 - Specific phenotypes were NOT observed.
  • F16050 - Specific phenotypes were NOT observed.
  • F18628 - Specific phenotypes were NOT observed.
  • F20319 - Specific phenotypes were NOT observed.
  • F20710 - seed::increased size / seed::increased length
  • F23127 - Specific phenotypes were NOT observed.
  • F25435 - Specific phenotypes were NOT observed.
  • F26514 - Specific phenotypes were NOT observed.
  • F26626 - Specific phenotypes were NOT observed.
  • F26637 - Specific phenotypes were NOT observed.
  • F28422 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

19 mutant lines found