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  3. RAFL06-10-M04

RAFL06-10-M04

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda09383)

full reading [+] show sequence

Nucleotide sequence: RAFL06-10-M04 - full reading 
GAGATAAACT TGACGCGTCC CTTCTTCATT CTCCGTCTTC TTCACGTCAC 
CGGAAAAACG ACGAATCTCA TTGCCTGAGA TTCTTCATCG GAATTAAACC 
TCCGGAGGAA TTAATCACGT CTCACATTTT TTCACCATGT CGAGTTTGGA 
GGAGCCGCTA AGCTTTGACA AGTTGCCAAG TATGAGCACT ATGGATAGGA 
TTCAGAGATT TTCTTCCGGT GCTTGTCGCC CCAGGGATGA TGTCGGTATG 
GGACACCGTT GGATTGAAGG AAGAGATTGC ACTACCTCTA ACAGTTGCAT 
TGATGATGAT AAAAGCTTTG CTAAAGAGTC ATTCCCGTGG AGAAGGCATA 
CTCGGAAATT ATCTGAAGGA GAGCATATGT TTAGGAATAT TTCGTTTGCT 
GGAAGGACTT CTACTGTTTC TGGGACTTTA AGGGAATCCA AAAGTTTTAA 
GGAGCAGAAG TATAGCACAT TTAGCAATGA GAATGGCACG TCGCATATAA 
GTAATAAGAT CTCTAAAGGT ATACCAAAGT TTGTGAAGAT TGTAGAAGTT 
GGTCCAAGAG ATGGCCTGCA GAATGAGAAA AATATAGTAC CCACATCTGT 
AAAGGTGGAA CTAATTCAGA GATTAGTTTC TTCTGGATTG CCTGTTGTCG 
AGGCTACAAG TTTTGTATCA CCAAAGTGGG TTCCCCAGCT TGCAGATGCA 
AAGGATGTAA TGGATGCAGT AAATACTTTA GATGGGGCTC GATTACCGGT 
TCTGACACCG AATCTAAAAG GCTTTCAAGC GGCTGTATCT GCAGGTGCAA 
AGGAAGTTGC AATCTTTGCA TCGGCTTCTG AGTCATTCTC CTTGTCAAAT 
ATTAACTGTA CCATCGAAGA GAGTCTCTTG AGATATCGTG TTGTTGCCAC 
TGCTGCAAAG GAGCATTCGG TTCCAGTCCG TGGGTATGTA TCTTGCGTTG 
TGGGGTGTCC AGTAGAGGGA CCTGTTCTAC CCTCAAAAGT GGCTTATGTT 
GTGAAAGAAC TCTATGACAT GGGCTGCTTT GAGATTTCTC TGGGTGATAC 
AATTGGAATC GGCACTCCTG GTTCTGTGGT TCCAATGCTT GAAGCCGTGA 
TGGCAGTTGT GCCAGCGGAC AAGCTGGCTG TTCACTTCCA TGATACCTAT 
GGGCAAGCTC TTGCAAACAT ATTGGTGTCT CTCCAGATGG GAATAAGCAT 
AGTAGACTCA TCAATTGCCG GATTAGGCGG CTGCCCATAT GCAAAAGGAG 
CTTCAGGAAA TGTAGCCACA GAAGATGTGG TTTACATGTT GAACGGTTTA 
GGCGTCCACA CCAATGTCGA CTTGGGAAAG CTTATAGCTG CTGGAGATTT 
CATCAGCAAG CATCTCGGTC GTCCCAATGG TTCGAAGGCT GCCGTTGCCC 
TCAACCGTCG TATCACAGCT GATGCCTCCA AGATATGAGT TTTATTAGAC 
CATCTCCAAT GTATAGCTCT ATATCTTACT CGAAAATAGA GTTACTCTCT 
ACAATTTATC CCTCTATTTT CTACTCTAAA AAGAATATTC TTAAAAAATA 
TTCTATTTCT ATTTTATATA CTAATACATT TTATTTATCT

Gene models with high sequence identity

  1. AT2G26800.1 [+] show detail - Aldolase superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam Pyruvate carboxyltransferase 4.4e-53
Gene3D Aldolase-type TIM barrel 6.3e-64
HMMPanther HYDROXYMETHYLGLUTARYL-COA LYASE 1.1e-112
HMMPanther ISOPROPYLMALATE SYNTHASE RELATED 1.1e-112
ProfileScan Pyruvate carboxyltransferase 35.261
superfamily Aldolase 9.2e-78

See the detailed result >

AT2G26800.1

Model type
Protein coding
Short Description
Aldolase superfamily protein
Computational Description
Aldolase superfamily protein; FUNCTIONS IN: hydroxymethylglutaryl-CoA lyase activity, catalytic activity; INVOLVED IN: leucine metabolic process, metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Pyruvate carboxyltransferase (InterPro:IPR000891); BEST Arabidopsis thaliana protein match is: 2-isopropylmalate synthase 2 (TAIR:AT5G23020.1); Has 10820 Blast hits to 10806 proteins in 2215 species: Archae - 426; Bacteria - 7058; Metazoa - 235; Fungi - 307; Plants - 196; Viruses - 0; Other Eukaryotes - 2598 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-10-M04 introduced

  • F01239 - Specific phenotypes were NOT observed.
  • F09051 - Specific phenotypes were NOT observed.
  • F18630 - Specific phenotypes were NOT observed.
  • F19140 - rosette leaf::decreased size / rosette leaf::upturned / rosette leaf::increased width / stem::present in fewer numbers in organism

Mutant lines with disrupted or induced

5 mutant lines found