1. Home
  2. Full-length cDNAs
  3. RAFL06-10-M10

RAFL06-10-M10

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda02991)

full reading [+] show sequence

Nucleotide sequence: RAFL06-10-M10 - full reading 
AGGGTTTTCG TCTCTTTCAC TCGTAACCGG AAGAGAGGAC AAGATCCTCC 
ACTAATTTCA CAAAAAGCTC ATCTTTTTAT TCGTTTTCGA ATCGATTCGT 
TATCTGGGTT CAAGTATCAA ATTCTCTGGT TTCGTTTTTC GTTTTTGATT 
TGTTCTCTCT CTTTCGGAAA AAGTTTGGTT TTTTTTTTTT GTTTGAAACA 
ATGGGAAGAG GCAAGTTCAA GGGTAAACCT ACCGGCCAAC GCCGATTCTC 
TAGTGCTGCT GATATTCTTG CTGGCACATC TGCTGCACGT CCTCGATCAT 
TCAAACAGAA AGAAGCTGAG TACGAAGAAG ATGTTGAAGA AGAGTCAGAG 
GAGGAATCTG AAGAAGAATC CGAAGATGAA GCTGATGTGA AGAAGAAAGG 
AGCTGAAGCT GTTATCGAAG TTGATAACCC TAACAGAGTA AGACAAAAGA 
CCTTGAAAGC AAAAGACCTC GATGCTAGTA AAACCACTGA ACTCTCAAGG 
CGTGAAAGAG AGGAGCTAGA GAAGCAGCGA GCTCATGAGC GATACATGAG 
GTTGCAAGAG CAAGGCAAAA CCGAACAAGC AAGGAAGGAC TTGGATCGTT 
TGGCTCTGAT TCGCCAACAG AGAGAAGAAG CTGCCAAGAA GCGAGAAGAG 
GAAAAAGCCG CAAGAGACGC TAAGAAAGTC GAAGGGCGCA AATGAGAAGT 
GATCACACTC AAAAGACCTG CCTACTATGC GATTAAGATG TGTTGTTTTT 
ACTTTGTTCT TTTTCGATTG ATAAAAGATA AAACCTCTGC TATTTACTCT 
GTTATCTCTC GATTTTAAGT TCGGTTTAAA AGGATTGGAT GTAGTTCAAA 
ATATAAACTC GTTTAAGATT TATGCGTGGA AGCTTCCTCA G

Gene models with high sequence identity

  1. AT5G46020.1 [+] show detail - CONTAINS InterPro DOMAIN/s: Casein kinase substrate, phosphoprotein PP28 (InterPro:IPR019380); Ha...
    E-value: 0; Score: 99.78

 

InterPro Scan Digest

Program Description E-value
HMMPfam Casein kinase substrate, phosphoprotein PP28 1.7e-29
HMMPanther 28 KDA HEAT- AND ACID-STABLE PHOSPHOPROTEIN ( 1.9e-35
Coil coiled-coil 0
Coil coiled-coil 0
Coil coiled-coil 0

See the detailed result >

AT5G46020.1

Model type
Protein coding
Computational Description
CONTAINS InterPro DOMAIN/s: Casein kinase substrate, phosphoprotein PP28 (InterPro:IPR019380); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-10-M10 introduced

  • F19718 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

8 mutant lines found