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RAFL06-10-N03

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda02992)

full reading [+] show sequence

Nucleotide sequence: RAFL06-10-N03 - full reading 
AAAACAAACA AAAAATCTAG TGTTCGGCTC TAACACGCTC GACGACCATG 
GCGGTCTCGT TTAATACAAC GCTTCACCAG CCTTCTCTGA GTCCGAGCTG 
TAGCATCAAG CTTTATTCTG GGTTAAAGCC TCAATCTGCA AGCTTTTTGG 
CAAGTGGGTA TCAGAATTTG AACAAGGAGT TCTATGGAAG AGTTTATAAG 
AGTCTGCAAT CTGGGACTGG GAAAGCGAGC AGGTCACGGG TAAAGATGAT 
GCCAATAGGA ACACCGAGAG TACCCTACAG AAACCGAGAA GAAGGGACTT 
GGCAATGGGT TGATATATGG AATGCCCTTT ATCGAGAGCG TGTAATCTTC 
ATTGGACAAA ACATTGATGA AGAGTTTAGC AACCAGATAT TAGCAACCAT 
GTTGTACCTT GATACTCTTG ATGACTCGAG GAGGATTTAT ATGTACCTAA 
ATGGTCCGGG TGGTGATCTT ACTCCAAGTC TAGCCATCTA TGATACAATG 
AAGAGCTTGA AAAGTCCGGT TGGGACACAT TGCGTTGGGC TTGCTTACAA 
CCTTGCAGGT TTTCTTCTTG CGGCTGGAGA AAAGGGTCAC CGATTTGCGA 
TGCCATTATC AAGAATCGCC CTCCAGTCAC CAGCTGGTGC AGCCCGTGGT 
CAGGCTGATG ATATCCAAAA TGAAGCAAAA GAGCTTTCAA GGATAAGAGA 
CTACCTCTTC AATGAACTAG CCAAGAATAC AGGCCAGCCT GCGGAAAGGG 
TCTTCAAAGA CTTGAGCCGG GTGAAAAGGT TCAATGCAGA GGAAGCAATC 
GAGTATGGAC TTATTGATAA GATTGTTAGA CCACCGCGCA TCAAAGAAGA 
CGCTCCTCGC CAAGACGAAA GCGCAGGGCT AGGCTAGTCT TTTTGTTTGT 
TTGTTATGTC AAAAGTTTTA ATCTTTATGT TATTGTGATT GTTACCTAAT 
AAAATCACTG ATTATTGT

Gene models with high sequence identity

  1. AT1G12410.1 [+] show detail - CLP protease proteolytic subunit 2
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam Peptidase S14, ClpP 1.4e-62
FPrintScan Peptidase S14, ClpP 4.4e-33
FPrintScan Peptidase S14, ClpP 4.4e-33
FPrintScan Peptidase S14, ClpP 4.4e-33
FPrintScan Peptidase S14, ClpP 4.4e-33
FPrintScan Peptidase S14, ClpP 4.4e-33
superfamily ClpP/crotonase 2.1e-43
HMMPanther Peptidase S14, ClpP 9.1e-66
Gene3D no description 3.2e-55
HAMAP CLPP_MF_00444 32.857

See the detailed result >

AT1G12410.1

Model type
Protein coding
Short Description
CLP protease proteolytic subunit 2
Curator Summary
Encodes a ClpP-related sequence. Though similar to ClpP proteins, this does not contains the highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001).
Computational Description
CLP protease proteolytic subunit 2 (CLP2); FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: chloroplast organization; LOCATED IN: in 6 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S14, ClpP (InterPro:IPR001907); BEST Arabidopsis thaliana protein match is: plastid-encoded CLP P (TAIR:ATCG00670.1); Has 13082 Blast hits to 13064 proteins in 2999 species: Archae - 2; Bacteria - 8275; Metazoa - 145; Fungi - 81; Plants - 1076; Viruses - 67; Other Eukaryotes - 3436 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-10-N03 introduced

  • F07110 - Specific phenotypes were NOT observed.
  • F08211 - stem::desaturated green / cauline leaf::abnormal / rosette leaf::desaturated green / rosette leaf::dark green / rosette leaf::abnormal / stem::desaturated green / cauline leaf::decreased width / stem::abnormal / cauline leaf::hyponastic / cauline leaf::desaturated green / cauline leaf::abnormal / sporophyte vegetative stage::decreased speed
  • F27718 - rosette leaf::abnormal / stem::desaturated green / stem::abnormal / fruit::abnormal
  • F27927 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

7 mutant lines found