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RAFL06-10-O06

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda17175)

full reading [+] show sequence

Nucleotide sequence: RAFL06-10-O06 - full reading 
GAATCTTAGT AATAATCCCA AAAACCAGAA AAAAAGGAGC TTTGCTTTTG 
TAGGAATTAA TGGATTCAGT GAACTCCTTC AAAGGATATG GAAAAGTAGA 
CGAAGCTCAA GATTTAGCAT TGAAGAAAAA GACAAGAAAA CGTCTACTTC 
TACTATCCAT CTCCGTCGTA GTTCTCATCG CCGTAATAAT CGCCGCCGTA 
GTCGCCACCG TCGTTCACAA GAACAAAAAC GAGTCAACAC CGAGTCCACC 
TCCCGAGTTA ACACCATCCA CTTCACTCAA AGCCATTTGC AGTGTAACTC 
GTTTCCCTGA ATCTTGCATT TCAAGTATCT CAAAGCTTCC ATCTTCCAAC 
ACAACAGATC CAGAGACTCT ATTCAAGCTC TCATTGAAAG TAATCATCGA 
TGAGCTTGAT TCGATTTCCG ATTTACCGGA GAAGCTATCG AAAGAGACTG 
AAGACGAAAG AATCAAATCT GCGTTAAGGG TTTGTGGAGA TCTGATCGAA 
GATGCTTTAG ATCGACTCAA CGACACTGTT TCCGCCATTG ATGACGAAGA 
AAAGAAGAAA ACTTTGTCAT CTTCCAAAAT CGAAGATCTC AAAACTTGGC 
TAAGCGCAAC GGTAACAGAT CACGAGACGT GTTTCGATTC GTTAGATGAG 
TTGAAACAGA ACAAAACAGA GTATGCGAAC TCGACGATTA CTCAGAATCT 
GAAATCGGCA ATGAGTAGAT CAACGGAGTT CACAAGTAAC AGTCTTGCAA 
TAGTATCGAA GATTCTTTCT GCGTTAAGCG ATTTGGGGAT TCCGATACAC 
AGGAGAAGAA GACTGATGAG TCATCATCAT CAGCAAAGTG TGGATTTTGA 
GAAATGGGCA CGACGGAGGT TGTTGCAAAC GGCAGGTTTA AAGCCTGATG 
TGACGGTGGC GGGTGATGGA ACCGGTGATG TGTTGACTGT GAATGAAGCG 
GTGGCTAAGG TGCCGAAGAA GAGTTTGAAG ATGTTTGTGA TTTATGTGAA 
GAGTGGAACT TATGTTGAGA ATGTTGTGAT GGATAAGAGT AAATGGAACG 
TTATGATTTA CGGTGACGGC AAAGGGAAGA CCATTATTTC CGGCAGCAAG 
AACTTCGTCG ACGGGACTCC TACTTACGAA ACGGCGACGT TTGCTATACA 
AGGCAAAGGA TTTATAATGA AGGATATTGG AATCATAAAC ACCGCGGGAG 
CAGCAAAACA CCAAGCTGTG GCATTCCGAT CAGGCTCTGA TTTCTCAGTC 
TATTACCAAT GCTCATTCGA TGGTTTTCAA GACACTCTTT ACCCTCACTC 
CAACCGCCAA TTCTACCGTG ACTGCGACGT TACTGGGACA ATCGACTTCA 
TTTTCGGAAG TGCTGCGGTC GTTTTCCAAG GCTGCAAAAT CATGCCTCGC 
CAGCCTCTTT CTAACCAATT CAACACCATA ACCGCTCAGG GCAAAAAAGA 
TCCGAACCAA AGCTCGGGGA TGTCGATTCA ACGATGCACT ATCTCCGCAA 
ACGGCAATGT GATTGCTCCC ACGTATCTTG GCCGGCCGTG GAAGGAGTTT 
TCCACGACGG TTATTATGGA GACGGTGATT GGAGCAGTGG TTCGACCGTC 
CGGGTGGATG TCATGGGTTT CTGGAGTTGA TCCACCAGCA AGTATTGTCT 
ACGGAGAGTA TAAGAATACG GGCCCGGGTT CAGATGTAAC GCAGAGAGTT 
AAATGGGCTG GATATAAACC GGTTATGTCG GACGCCGAGG CTGCGAAGTT 
TACAGTGGCT ACGCTTTTAC ACGGAGCTGA TTGGATACCG GCAACAGGAG 
TGATCAATCA GCTATCTTAA TATAGTGACA ATACAATTGG ATTCGTAGCT 
TGTTTTTGAA AACATCCGGT TGTGATCTAC TTTATATTTG TTTGACACTT 
ATGCATGATC TGTAATTTTT TCCAACATAG TTGTATTTTG TGTATCCCCT 
AATACGATAT CTTCTTGATG AAAAAAA

Gene models with high sequence identity

  1. AT1G53840.1 [+] show detail - pectin methylesterase 1
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam Pectinesterase, catalytic 8.2e-131
HMMPfam Pectinesterase inhibitor 1.7e-31
HMMSmart Pectinesterase inhibitor 1.6e-43
superfamily Pectin lyase fold/virulence factor 3.2e-101
superfamily Pectinesterase inhibitor 6.5e-20
PatternScan Pectinesterase, active site 0
PatternScan Pectinesterase, active site 0
Gene3D Pectinesterase inhibitor 5.4e-15
Gene3D Pectin lyase fold 2e-110
HMMTigr Pectinesterase inhibitor 2.2e-20
Coil coiled-coil 0

See the detailed result >

AT1G53840.1

Model type
Protein coding
Short Description
pectin methylesterase 1
Curator Summary
encodes a pectin methylesterase
Computational Description
pectin methylesterase 1 (PME1); FUNCTIONS IN: pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: extracellular region, plasma membrane, membrane, plant-type cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: pectinesterase family protein (TAIR:AT3G14300.1); Has 3031 Blast hits to 2961 proteins in 324 species: Archae - 8; Bacteria - 582; Metazoa - 1; Fungi - 194; Plants - 2221; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-10-O06 introduced

  • F01423 - Specific phenotypes were NOT observed.
  • F05604 - Specific phenotypes were NOT observed.
  • F09907 - Specific phenotypes were NOT observed.
  • F10817 - Specific phenotypes were NOT observed.
  • F17338 - seed::increased size / seed::increased length
  • F19024 - Specific phenotypes were NOT observed.
  • F21249 - seed::increased length
  • F21526 - Specific phenotypes were NOT observed.
  • F25139 - seed::increased size / seed::increased length
  • F25443 - Specific phenotypes were NOT observed.
  • F25851 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

13 mutant lines found