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RAFL06-10-O24

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda03060)

full reading [+] show sequence

Nucleotide sequence: RAFL06-10-O24 - full reading 
AAAAAAAAAA AACAGAGAGA GAGAACAACA ACCAAACACT CATTTCTCCA 
CATCTTGAGA GAAAAAAACA GAGCAGGTAT ATTAGAGATC TCATGGCGAT 
GGCGGTCTCC GGAGCTGTCC TCAGTGGGCT TGGTTCTTCG TTCCTCACCG 
GAGGCAAGAG AGGTGCCACC GCATTGGCAA GCGGCGTAGG CACTGGAGCT 
CAGAGAGTTG GCAGGAAAAC TCTTATTGTC GCTGCTGCGG CTGCTCAGCC 
TAAGAAATCT TGGATCCCTG CCGTTAAAGG TGGTGGCAAC TTCCTTGACC 
CTGAATGGCT CGATGGCTCG CTACCAGGAG ATTTCGGGTT CGACCCATTG 
GGTTTGGGGA AAGACCCGGC TTTTCTGAAA TGGTACAGAG AGGCTGAGCT 
GATCCATGGC CGATGGGCGA TGGCAGCGGT TCTTGGGATC TTCGTCGGCC 
AGGCCTGGAG CGGTGTGGCA TGGTTTGAAG CTGGAGCCCA GCCAGACGCG 
ATCGCTCCCT TCTCGTTCGG GTCGCTTCTT GGAACCCAAT TGCTTCTCAT 
GGGTTGGGTG GAGAGCAAAC GATGGGTCGA TTTCTTCAAC CCGGATTCTC 
AATCGGTTGA GTGGGCAACG CCATGGTCGA AGACCGCCGA GAATTTCGCG 
AACTATACCG GCGATCAGGG ATACCCCGGT GGGAGATTCT TCGATCCGTT 
GGGTCTCGCC GGGAAAAACC GCGACGGTGT TTATGAGCCG GACTTTGAGA 
AGCTGGAGAG GCTGAAATTG GCAGAGATTA AGCACTCGAG GCTCGCAATG 
GTTGCCATGT TGATCTTTTA CTTTGAGGCC GGGCAGGGGA AAACGCCTCT 
CGGTGCTCTT GGTTTGTGAG AAAACGGCAT GATGTTTTTG ATTCTGTAGA 
TACAATTTCT CTTCCAAAAA CCTAATGTTT CTCTTCTTCA ATGTGACATT 
TGGGAAAAGA TCATCAAACC ATTGCTATAA ATGTAAAATG AAATCGT

Gene models with high sequence identity

  1. AT1G15820.1 [+] show detail - light harvesting complex photosystem II subunit 6
    E-value: 0; Score: 99.90

 

InterPro Scan Digest

Program Description E-value
HMMPanther Chlorophyll A-B binding protein 7e-97
HMMPfam Chloroa_b-bind 8.9e-46
superfamily Chlorophyll a-b binding protein 2e-43

See the detailed result >

AT1G15820.1

Model type
Protein coding
Short Description
light harvesting complex photosystem II subunit 6
Curator Summary
Lhcb6 protein (Lhcb6), light harvesting complex of photosystem II.
Computational Description
light harvesting complex photosystem II subunit 6 (LHCB6); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: photosynthesis, nonphotochemical quenching; LOCATED IN: in 7 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: photosystem I light harvesting complex gene 6 (TAIR:AT1G19150.1); Has 2316 Blast hits to 2191 proteins in 220 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 1959; Viruses - 0; Other Eukaryotes - 355 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-10-O24 introduced

  • F00141 - Specific phenotypes were NOT observed.
  • F01022 - Specific phenotypes were NOT observed.
  • F04021 - Specific phenotypes were NOT observed.
  • F07140 - rosette leaf::dark green / rosette leaf::dark green / rosette leaf::abnormal / rosette leaf::increased width / rosette leaf::abnormal / sporophyte vegetative stage::decreased speed / stem::present in fewer numbers in organism
  • F07743 - Specific phenotypes were NOT observed.
  • F13619 - seed::increased size / seed::increased length
  • F17111 - Specific phenotypes were NOT observed.
  • F18512 - Specific phenotypes were NOT observed.
  • F19603 - Specific phenotypes were NOT observed.
  • F25833 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

14 mutant lines found