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  3. RAFL06-11-A17

RAFL06-11-A17

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda07535)

full reading [+] show sequence

Nucleotide sequence: RAFL06-11-A17 - full reading 
ACTCACTCTC ACTCACAAAA AAAAATGTCT ACCATTTCAA AACCTCTCTT 
CTTAAAACTT CTCTATATCT TCTTCTTCTT CTGCTACTCA GTTTCTCTCT 
CATGGTCTTC GTCTCTTTCT CTCCACTTTC CTCTCACATC TCTTCGTCTC 
ACTCCAACCA CAAACTCCTC CTCCTTCAAA ACCTCCCTCC TTTCTCGCCG 
GAACCCATCT CCGCCGTCGT CTCCGTACAC TTTCCGATCA AACATCAAAT 
ACTCAATGGC TCTAATCCTC TCTCTTCCCA TAGGAACACC ATCTCAGTCA 
CAAGAGCTAG TTCTTGACAC CGGAAGCCAA CTCTCATGGA TCCAATGCCA 
TCCCAAGAAA ATCAAGAAAC CACTTCCTCC TCCAACGACG TCGTTTGATC 
CTTCTTTATC TTCATCGTTC TCCGACCTAC CTTGCTCTCA TCCTCTTTGT 
AAACCTAGAA TTCCCGATTT TACCCTTCCC ACGTCTTGTG ACTCGAACCG 
TCTCTGTCAC TACTCTTACT TCTACGCTGA TGGAACCTTC GCCGAGGGCA 
ATCTCGTTAA AGAAAAATTC ACTTTCTCAA ATTCCCAAAC TACCCCTCCT 
TTGATTCTTG GTTGTGCTAA AGAGTCAACT GACGAGAAGG GTATTTTGGG 
AATGAATCTT GGTCGTCTTT CTTTTATCTC ACAAGCAAAG ATTTCTAAAT 
TCTCTTACTG TATCCCAACC CGGTCAAACC GTCCCGGTTT AGCCTCAACC 
GGCTCGTTTT ACCTCGGAGA TAACCCGAAT TCTCGTGGTT TCAAATACGT 
TTCTCTTTTG ACTTTTCCTC AAAGTCAACG CATGCCGAAT CTAGACCCTT 
TAGCTTACAC TGTACCATTA CAAGGTATCA GAATCGGACA AAAGAGACTC 
AACATACCCG GTTCTGTTTT TAGACCCGAT GCAGGTGGGT CGGGTCAAAC 
CATGGTTGAT TCGGGTTCTG AATTTACTCA CTTAGTCGAC GTGGCGTATG 
ATAAAGTCAA AGAAGAAATA GTGAGGCTTG TGGGATCAAG ATTAAAGAAA 
GGTTACGTGT ACGGTTCGAC AGCTGACATG TGTTTTGATG GTAACCATTC 
GATGGAGATC GGACGGTTGA TAGGCGATCT TGTGTTTGAG TTTGGGAGAG 
GTGTTGAGAT ACTCGTTGAG AAACAAAGCC TTTTGGTTAA CGTAGGAGGT 
GGGATTCACT GTGTTGGAAT CGGACGGTCA AGCATGCTTG GTGCAGCTAG 
TAATATAATC GGGAACGTTC ATCAGCAAAA TCTTTGGGTT GAGTTTGATG 
TGACCAATAG GAGAGTTGGT TTTAGTAAAG CTGAGTGTAG ATTATTGCCG 
TGAGTAGGTG AATATTCTTC TACGGTCGTG CGTATTAGTT TTGAGTTGTA 
TCTCATTATG ATGATCGTTG GATGTTTGAT CGAATGGTGT ATAGGAAATC 
TGGGATTTTT GTGGGTCCCG TAGAAGGACA ACTGTCTGAA GCAAACTTCT 
CAATCTTTAT TAGGCTCTGG AACTATGTAT AAATGTTTGT ACTATGATAA 
TTAAAAGCTT GTATATTAAA TGGTTAATAT AACTTGTTAT CAG

Gene models with high sequence identity

  1. AT5G37540.1 [+] show detail - Eukaryotic aspartyl protease family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily Peptidase aspartic 1.1e-76
PatternScan Peptidase aspartic, active site 0
Gene3D Peptidase aspartic, catalytic 3.3e-18
Gene3D Peptidase aspartic, catalytic 3.7e-25
HMMPanther CHLOROPLAST NUCLEIOD DNA-BINDING-RELATED 2.8e-90
HMMPanther Peptidase A1 2.8e-90
FPrintScan Peptidase A1 7e-05
FPrintScan Peptidase A1 7e-05
FPrintScan Peptidase A1 7e-05
HMMPfam Peptidase A1 1.8e-05
HMMPfam Peptidase A1 0.00026

See the detailed result >

AT5G37540.1

Model type
Protein coding
Short Description
Eukaryotic aspartyl protease family protein
Computational Description
Eukaryotic aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase aspartic (InterPro:IPR021109), Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461), Peptidase aspartic, active site (InterPro:IPR001969); BEST Arabidopsis thaliana protein match is: Eukaryotic aspartyl protease family protein (TAIR:AT1G66180.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-11-A17 introduced

  • F02921 - seed::decreased length
  • F08910 - Specific phenotypes were NOT observed.
  • F12630 - Specific phenotypes were NOT observed.
  • F14422 - Specific phenotypes were NOT observed.
  • F15418 - Specific phenotypes were NOT observed.
  • F29522 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

8 mutant lines found