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  3. RAFL06-11-A22

RAFL06-11-A22

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda07536)

full reading [+] show sequence

Nucleotide sequence: RAFL06-11-A22 - full reading 
GAGAATCCCA ATGAGGATCT TACCCGAACC TCGAGGTTCG GTTCCGTGTC 
TTCTCCTTCT TGTGTCGGTT CTCTTATCAG CGACTCTCTC ACTCGCTCGT 
GTCGTCGAAG TTGTCGGTTA CGCCGAGAGC AAGATCAAAA CCCCCCATGC 
ATTTTCAGGA CTTCGAGTGA CGATCGACTG TAAGGTGAAT AAAGGCCATT 
TTGTTACAAA AGGTTCGGGA AACATTGACG ACAAAGGAAA GTTTGGTCTT 
AATATTCCTC ATGACATTGT CTCCGACAAC GGAGCGTTAA AGGAGGAGTG 
TTACGCTCAG CTTCACAGCG CGGCGGGAAC ACCTTGTCCG GCTCACGACG 
GCCTTGAGTC CACCAAGATC GTGTTTTTAT CCAAATCCGG GGATAAACAC 
ATTTTGGGTC TCAAACAAAA TCTGAAATTT TCACCGGAGA TTTGCGTTTC 
CAAATTCTTC TGGCCTATGC CTAAGTTGCC TCCTTTTAAG GGCTTTGATC 
ATCCTTTCCC TTTACCTCCA CCTTTGGAAC TTCCACCGTT TCTCAAGAAG 
CCATGTCCAC CTAAATACAG TCCTCCTGTG GAGGTTCCAC CCCCGGTACC 
AGTTTACGAG CCGCCGCCAA AGAAAGAGAT TCCCCCGCCG GTTCCGGTTT 
ACGATCCACC GCCTAAGAAA GAGGTTCCAC CACCTGTCCC AGTTTACAAG 
CCACCACCAA AGGTGGAGCT TCCACCGCCT ATTCCTAAGA AGCCTTGTCC 
ACCTAAACCG CCGAAGATAG AGCACCCACC TCCGGTTCCG GTTTACAAGC 
CACCGCCAAA GATAGAGAAG CCACCTCCGG TTCCGGTTTA CAAGCCCCCG 
CCAAAGATAG AGCACCCACC TCCCGTTCCG GTACACAAGC TACCGAAGAA 
GCCATGTCCG CCTAAGAAAG TTGATCCACC GCCGGTGCCA GTCCACAAAC 
CACCAACGAA GAAGCCTTGT CCGCCTAAGA AAGTTGATCC ACCGCCGGTT 
CCAGTCCACA AGCCGCCGCC AAAGATAGTC ATTCCACCGC CGAAGATAGA 
GCACCCACCT CCAGTTCCGG TTTACAAGCC GCCGCCGAAG ATAGAGCATC 
CACCAATCTA CATACCACCA ATTGTGAAGA AGCCGTGTCC TCCGCCGGTA 
CCAATATACA AACCACCGGT TGTGATCCCC AAGAAGCCAT GCCCTCCGCC 
GGTACCAGTA TACAAACCAC CGGTAGTGGT GATTCCAAAG AAGCCATGTC 
CGCCACTTCC ACAGCTCCCA CCACTTCCAA AGTTTCCACC TCTTCCTCCT 
AAATACATTC ACCACCCCAA GTTCGGGAAA TGGCCTCCGT TGCCTCCACA 
CCCTTGAGAA ACATTAAATA CGTATATATA GATATACGTA TACTCATGTA 
TAATCAACGT GTTTGCCTTT TTTTAATATT TTATCTTTGC ATATGTTTTA 
TATCTTGTTT CTTTTGTTGG CTTTGAGTTC TCTTTGTGTA GACTGGTTGT 
TTATATTCCC GCAATCTTCC AACAATAATA TGGTAATGAT

Gene models with high sequence identity

  1. AT4G38770.1 [+] show detail - proline-rich protein 4
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam Pollen Ole e 1 allergen/extensin 1.9e-12
FPrintScan PRICHEXTENSN 9.8e-09
FPrintScan PRICHEXTENSN 9.8e-09
FPrintScan PRICHEXTENSN 9.8e-09
FPrintScan PRICHEXTENSN 9.8e-09

See the detailed result >

AT4G38770.1

Model type
Protein coding
Short Description
proline-rich protein 4
Curator Summary
Encodes one of four proline-rich proteins in Arabidopsis which are predicted to localize to the cell wall. Transcripts are most abundant in aerial organs of the plant.
Computational Description
proline-rich protein 4 (PRP4); CONTAINS InterPro DOMAIN/s: Pollen Ole e 1 allergen/extensin (InterPro:IPR006041); BEST Arabidopsis thaliana protein match is: proline-rich protein 2 (TAIR:AT2G21140.1); Has 142477 Blast hits to 44863 proteins in 2266 species: Archae - 463; Bacteria - 33947; Metazoa - 50713; Fungi - 14839; Plants - 19672; Viruses - 4087; Other Eukaryotes - 18756 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-11-A22 introduced

  • F12326 - Specific phenotypes were NOT observed.
  • F20311 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

6 mutant lines found